This commit allows reading and writing arbitrary files in an APK file. Additionally it allows deleting files from APK files. A `RawResourcePatch` class has been added which has access to `ResourceContext` but ReVanced Patcher will not decode APK resources. A regular `ResourcePatch` can read and write arbitrary files from an APK file, unless they are decoded to `PatcherConfig.apkFiles`. On attempt to get a file from `PatcherConfig.apkFiles` if the second parameter is true, it will read and write the raw resource file from the original APK to `PatcherConfig.apkFiles` if it does not exist. With this commit, many APIs have been deprecated as well, such as `DomFileEditor` and instead a `Document` has been added.
