refactor: do initial refactoring attempt

BREAKING CHANGE: This removes the previously available `Path` option

.gitattributes

@@ -0,0 +1,9 @@
+#
+# https://help.github.com/articles/dealing-with-line-endings/
+#
+# Linux start script should use lf
+/gradlew        text eol=lf
+
+# These are Windows script files and should use crlf
+*.bat           text eol=crlf
+

CHANGELOG.md

@@ -1,3 +1,67 @@
+## [11.0.4](https://github.com/revanced/revanced-patcher/compare/v11.0.3...v11.0.4) (2023-07-01)
+
+
+### Bug Fixes
+
+* clear method lookup maps ([#198](https://github.com/revanced/revanced-patcher/issues/198)) ([9d81baf](https://github.com/revanced/revanced-patcher/commit/9d81baf4b4ca7514f8a1009e72218638609a7c7f))
+
+## [11.0.4-dev.1](https://github.com/revanced/revanced-patcher/compare/v11.0.3...v11.0.4-dev.1) (2023-07-01)
+
+
+### Bug Fixes
+
+* clear method lookup maps ([#198](https://github.com/revanced/revanced-patcher/issues/198)) ([9d81baf](https://github.com/revanced/revanced-patcher/commit/9d81baf4b4ca7514f8a1009e72218638609a7c7f))
+
+## [11.0.3](https://github.com/revanced/revanced-patcher/compare/v11.0.2...v11.0.3) (2023-06-30)
+
+
+### Bug Fixes
+
+* NPE on method lookup ([#195](https://github.com/revanced/revanced-patcher/issues/195)) ([fcef434](https://github.com/revanced/revanced-patcher/commit/fcef4342e8bde73945e8315aef6337cc8a8d8572))
+
+## [11.0.3-dev.1](https://github.com/revanced/revanced-patcher/compare/v11.0.2...v11.0.3-dev.1) (2023-06-28)
+
+
+### Bug Fixes
+
+* NPE on method lookup ([#195](https://github.com/revanced/revanced-patcher/issues/195)) ([fcef434](https://github.com/revanced/revanced-patcher/commit/fcef4342e8bde73945e8315aef6337cc8a8d8572))
+
+## [11.0.2](https://github.com/revanced/revanced-patcher/compare/v11.0.1...v11.0.2) (2023-06-27)
+
+
+### Bug Fixes
+
+* catch exceptions from closing patches ([d5d6f85](https://github.com/revanced/revanced-patcher/commit/d5d6f85084c03ed9c776632823ca12394a716167))
+* do not load annotations as patches ([519359a](https://github.com/revanced/revanced-patcher/commit/519359a9eb0e9dfa390c5016e9fe4a7490b8ab18))
+* only close succeeded patches ([b8151eb](https://github.com/revanced/revanced-patcher/commit/b8151ebccb5b27dd9e06fa63235cf9baeef1c0ee))
+* use `versionCode` if `versionName` is unavailable ([6e1b647](https://github.com/revanced/revanced-patcher/commit/6e1b6479b677657c226693e9cc6b63f4ef2ee060))
+
+
+### Performance Improvements
+
+* resolve fingerprints using method maps ([#185](https://github.com/revanced/revanced-patcher/issues/185)) ([d718134](https://github.com/revanced/revanced-patcher/commit/d718134ab26423e02708e01eba711737f9260ba0))
+
+## [11.0.2-dev.4](https://github.com/revanced/revanced-patcher/compare/v11.0.2-dev.3...v11.0.2-dev.4) (2023-06-27)
+
+
+### Bug Fixes
+
+* do not load annotations as patches ([519359a](https://github.com/revanced/revanced-patcher/commit/519359a9eb0e9dfa390c5016e9fe4a7490b8ab18))
+
+## [11.0.2-dev.3](https://github.com/revanced/revanced-patcher/compare/v11.0.2-dev.2...v11.0.2-dev.3) (2023-06-27)
+
+
+### Performance Improvements
+
+* resolve fingerprints using method maps ([#185](https://github.com/revanced/revanced-patcher/issues/185)) ([d718134](https://github.com/revanced/revanced-patcher/commit/d718134ab26423e02708e01eba711737f9260ba0))
+
+## [11.0.2-dev.2](https://github.com/revanced/revanced-patcher/compare/v11.0.2-dev.1...v11.0.2-dev.2) (2023-06-18)
+
+
+### Bug Fixes
+
+* use `versionCode` if `versionName` is unavailable ([6e1b647](https://github.com/revanced/revanced-patcher/commit/6e1b6479b677657c226693e9cc6b63f4ef2ee060))
+
 ## [11.0.2-dev.1](https://github.com/revanced/revanced-patcher/compare/v11.0.1...v11.0.2-dev.1) (2023-06-14)
 
 

arsclib-utils/.gitignore

@@ -0,0 +1,42 @@
+.gradle
+build/
+!gradle/wrapper/gradle-wrapper.jar
+!**/src/main/**/build/
+!**/src/test/**/build/
+
+### IntelliJ IDEA ###
+.idea/modules.xml
+.idea/jarRepositories.xml
+.idea/compiler.xml
+.idea/libraries/
+*.iws
+*.iml
+*.ipr
+out/
+!**/src/main/**/out/
+!**/src/test/**/out/
+
+### Eclipse ###
+.apt_generated
+.classpath
+.factorypath
+.project
+.settings
+.springBeans
+.sts4-cache
+bin/
+!**/src/main/**/bin/
+!**/src/test/**/bin/
+
+### NetBeans ###
+/nbproject/private/
+/nbbuild/
+/dist/
+/nbdist/
+/.nb-gradle/
+
+### VS Code ###
+.vscode/
+
+### Mac OS ###
+.DS_Store

arsclib-utils/build.gradle.kts

@@ -0,0 +1,18 @@
+plugins {
+    kotlin("jvm")
+    `maven-publish`
+}
+
+group = "app.revanced"
+
+dependencies {
+    implementation("io.github.reandroid:ARSCLib:1.1.7")
+}
+
+java {
+    withSourcesJar()
+}
+
+kotlin {
+    jvmToolchain(11)
+}

arsclib-utils/src/main/kotlin/app/revanced/arsc/ApkResourceException.kt

@@ -0,0 +1,72 @@
+package app.revanced.arsc
+
+/**
+ * An exception thrown when there is an error with APK resources.
+ *
+ * @param message The exception message.
+ * @param throwable The corresponding [Throwable].
+ */
+sealed class ApkResourceException(message: String, throwable: Throwable? = null) : Exception(message, throwable) {
+    /**
+     * An exception when locking resources.
+     *
+     * @param message The exception message.
+     * @param throwable The corresponding [Throwable].
+     */
+    class Locked(message: String, throwable: Throwable? = null) : ApkResourceException(message, throwable)
+
+    /**
+     * An exception when writing resources.
+     *
+     * @param message The exception message.
+     * @param throwable The corresponding [Throwable].
+     */
+     class Write(message: String, throwable: Throwable? = null) : ApkResourceException(message, throwable)
+
+    /**
+     * An exception when reading resources.
+     *
+     * @param message The exception message.
+     * @param throwable The corresponding [Throwable].
+     */
+    class Read(message: String, throwable: Throwable? = null) : ApkResourceException(message, throwable)
+    /**
+     * An exception when decoding resources.
+     *
+     * @param message The exception message.
+     * @param throwable The corresponding [Throwable].
+     */
+    class Decode(message: String, throwable: Throwable? = null) : ApkResourceException(message, throwable)
+
+    /**
+     * An exception when encoding resources.
+     *
+     * @param message The exception message.
+     * @param throwable The corresponding [Throwable].
+     */
+    class Encode(message: String, throwable: Throwable? = null) : ApkResourceException(message, throwable)
+
+    /**
+     * An exception thrown when a reference could not be resolved.
+     *
+     * @param reference The invalid reference.
+     * @param throwable The corresponding [Throwable].
+     */
+    class InvalidReference(reference: String, throwable: Throwable? = null) :
+        ApkResourceException("Failed to resolve: $reference", throwable) {
+
+        /**
+         * An exception thrown when a reference could not be resolved.
+         *
+         * @param type The type of the reference.
+         * @param name The name of the reference.
+         * @param throwable The corresponding [Throwable].
+         */
+        constructor(type: String, name: String, throwable: Throwable? = null) : this("@$type/$name", throwable)
+    }
+
+    /**
+     * An exception thrown when the Apk file not have a resource table, but was expected to have one.
+     */
+    class MissingResourceTable : ApkResourceException("Apk does not have a resource table.")
+}

arsclib-utils/src/main/kotlin/app/revanced/arsc/archive/Archive.kt

@@ -0,0 +1,28 @@
+@file:Suppress("MemberVisibilityCanBePrivate")
+
+package app.revanced.arsc.archive
+
+import app.revanced.arsc.resource.ResourceContainer
+import com.reandroid.apk.ApkModule
+import com.reandroid.apk.DexFileInputSource
+import com.reandroid.archive.InputSource
+import java.io.File
+import java.io.Flushable
+
+/**
+ * A class for reading/writing files in an [ApkModule].
+ *
+ * @param module The [ApkModule] to operate on.
+ */
+class Archive(internal val module: ApkModule) : Flushable {
+    val mainPackageResources = ResourceContainer(this, module.tableBlock)
+
+    fun save(output: File) {
+        flush()
+        module.writeApk(output)
+    }
+    fun readDexFiles(): MutableList<DexFileInputSource> = module.listDexFiles()
+    fun write(inputSource: InputSource) = module.apkArchive.add(inputSource) // Overwrites existing files.
+    fun read(name: String): InputSource? = module.apkArchive.getInputSource(name)
+    override fun flush() = mainPackageResources.flush()
+}

arsclib-utils/src/main/kotlin/app/revanced/arsc/logging/Logger.kt

@@ -0,0 +1,7 @@
+package app.revanced.arsc.logging
+interface Logger {
+    fun error(msg: String)
+    fun warn(msg: String)
+    fun info(msg: String)
+    fun trace(msg: String)
+}

arsclib-utils/src/main/kotlin/app/revanced/arsc/resource/Resource.kt

@@ -0,0 +1,166 @@
+package app.revanced.arsc.resource
+
+import app.revanced.arsc.ApkResourceException
+import com.reandroid.arsc.coder.EncodeResult
+import com.reandroid.arsc.coder.ValueDecoder
+import com.reandroid.arsc.value.Entry
+import com.reandroid.arsc.value.ValueType
+import com.reandroid.arsc.value.array.ArrayBag
+import com.reandroid.arsc.value.array.ArrayBagItem
+import com.reandroid.arsc.value.plurals.PluralsBag
+import com.reandroid.arsc.value.plurals.PluralsBagItem
+import com.reandroid.arsc.value.plurals.PluralsQuantity
+import com.reandroid.arsc.value.style.StyleBag
+import com.reandroid.arsc.value.style.StyleBagItem
+
+/**
+ * A resource value.
+ */
+sealed class Resource {
+    internal abstract fun write(entry: Entry, resources: ResourceContainer)
+}
+
+internal val Resource.isComplex get() = when (this) {
+    is Scalar -> false
+    is Complex -> true
+}
+
+/**
+ * A simple resource.
+ */
+open class Scalar internal constructor(private val valueType: ValueType, private val value: Int) : Resource() {
+    protected open fun data(resources: ResourceContainer) = value
+
+    override fun write(entry: Entry, resources: ResourceContainer) {
+        entry.setValueAsRaw(valueType, data(resources))
+    }
+
+    internal open fun toArrayItem(resources: ResourceContainer) = ArrayBagItem.create(valueType, data(resources))
+    internal open fun toStyleItem(resources: ResourceContainer) = StyleBagItem.create(valueType, data(resources))
+}
+
+/**
+ * A marker class for complex resources.
+ */
+sealed class Complex : Resource()
+
+private fun encoded(encodeResult: EncodeResult?) = encodeResult?.let { Scalar(it.valueType, it.value) }
+    ?: throw ApkResourceException.Encode("Failed to encode value")
+
+/**
+ * Encode a color.
+ *
+ * @param hex The hex value of the color.
+ * @return The encoded [Resource].
+ */
+fun color(hex: String) = encoded(ValueDecoder.encodeColor(hex))
+
+/**
+ * Encode a dimension or fraction.
+ *
+ * @param value The dimension value such as 24dp.
+ * @return The encoded [Resource].
+ */
+fun dimension(value: String) = encoded(ValueDecoder.encodeDimensionOrFraction(value))
+
+/**
+ * Encode a boolean resource.
+ *
+ * @param value The boolean.
+ * @return The encoded [Resource].
+ */
+fun boolean(value: Boolean) = Scalar(ValueType.INT_BOOLEAN, if (value) -Int.MAX_VALUE else 0)
+
+/**
+ * Encode a float.
+ *
+ * @param n The number to encode.
+ * @return The encoded [Resource].
+ */
+fun float(n: Float) = Scalar(ValueType.FLOAT, n.toBits())
+
+/**
+ * Create an integer [Resource].
+ *
+ * @param n The number to encode.
+ * @return The integer [Resource].
+ */
+fun integer(n: Int) = Scalar(ValueType.INT_DEC, n)
+
+/**
+ * Create a reference [Resource].
+ *
+ * @param resourceId The target resource.
+ * @return The reference resource.
+ */
+fun reference(resourceId: Int) = Scalar(ValueType.REFERENCE, resourceId)
+
+/**
+ * Resolve and create a reference [Resource].
+ *
+ * @see reference
+ * @param ref The reference string to resolve.
+ * @param resourceTable The resource table to resolve the reference with.
+ * @return The reference resource.
+ */
+fun reference(resourceTable: ResourceTable, ref: String) = reference(resourceTable.resolve(ref))
+
+/**
+ * An array [Resource].
+ *
+ * @param elements The elements of the array.
+ */
+class Array(private val elements: Collection<Scalar>) : Complex() {
+    override fun write(entry: Entry, resources: ResourceContainer) {
+        ArrayBag.create(entry).addAll(elements.map { it.toArrayItem(resources) })
+    }
+}
+
+/**
+ * A style resource.
+ *
+ * @param elements The attributes to override.
+ * @param parent A reference to the parent style.
+ */
+class Style(private val elements: Map<String, Scalar>, private val parent: String? = null) : Complex() {
+    override fun write(entry: Entry, resources: ResourceContainer) {
+        val resTable = resources.resourceTable
+        val style = StyleBag.create(entry)
+        parent?.let {
+            style.parentId = resTable.resolve(parent)
+        }
+
+        style.putAll(
+            elements.asIterable().associate {
+                StyleBag.resolve(resTable.encodeMaterials, it.key) to it.value.toStyleItem(resources)
+            })
+    }
+}
+
+/**
+ * A quantity string [Resource].
+ *
+ * @param elements A map of the quantity to the corresponding string.
+ */
+class Plurals(private val elements: Map<String, String>) : Complex() {
+    override fun write(entry: Entry, resources: ResourceContainer) {
+        val plurals = PluralsBag.create(entry)
+
+        plurals.putAll(elements.asIterable().associate { (k, v) ->
+            PluralsQuantity.value(k) to PluralsBagItem.string(resources.getOrCreateString(v))
+        })
+    }
+}
+
+/**
+ * A string [Resource].
+ *
+ * @param value The string value.
+ */
+class StringResource(val value: String) : Scalar(ValueType.STRING, 0) {
+    private fun tableString(resources: ResourceContainer) = resources.getOrCreateString(value)
+
+    override fun data(resources: ResourceContainer) = tableString(resources).index
+    override fun toArrayItem(resources: ResourceContainer) = ArrayBagItem.string(tableString(resources))
+    override fun toStyleItem(resources: ResourceContainer) = StyleBagItem.string(tableString(resources))
+}

arsclib-utils/src/main/kotlin/app/revanced/arsc/resource/ResourceContainer.kt

@@ -0,0 +1,167 @@
+package app.revanced.arsc.resource
+
+import app.revanced.arsc.ApkResourceException
+import app.revanced.arsc.archive.Archive
+import com.reandroid.apk.xmlencoder.EncodeUtil
+import com.reandroid.arsc.chunk.TableBlock
+import com.reandroid.arsc.chunk.xml.ResXmlDocument
+import com.reandroid.arsc.value.Entry
+import com.reandroid.arsc.value.ResConfig
+import java.io.Closeable
+import java.io.File
+import java.io.Flushable
+
+class ResourceContainer(private val archive: Archive, internal val tableBlock: TableBlock) : Flushable {
+    private val packageBlock = tableBlock.pickOne() // Pick the main package block.
+    internal lateinit var resourceTable: ResourceTable // TODO: Set this.
+
+    private val lockedResourceFileNames = mutableSetOf<String>()
+
+    private fun lock(resourceFile: ResourceFile) {
+        if (resourceFile.name in lockedResourceFileNames) {
+            throw ApkResourceException.Locked("Resource file ${resourceFile.name} is already locked.")
+        }
+
+        lockedResourceFileNames.add(resourceFile.name)
+    }
+
+    private fun unlock(resourceFile: ResourceFile) {
+        lockedResourceFileNames.remove(resourceFile.name)
+    }
+
+
+    fun <T : ResourceFile> openResource(name: String): ResourceFileEditor<T> {
+        val inputSource = archive.read(name)
+            ?: throw ApkResourceException.Read("Resource file $name not found.")
+
+        val resourceFile = when {
+            ResXmlDocument.isResXmlBlock(inputSource.openStream()) -> {
+                val xmlDocument = archive.module
+                    .loadResXmlDocument(inputSource)
+                    .decodeToXml(resourceTable.entryStore, packageBlock.id)
+
+                ResourceFile.XmlResourceFile(name, xmlDocument)
+            }
+
+            else -> {
+                val bytes = inputSource.openStream().use { it.readAllBytes() }
+
+                ResourceFile.BinaryResourceFile(name, bytes)
+            }
+        }
+
+        try {
+            @Suppress("UNCHECKED_CAST")
+            return ResourceFileEditor(resourceFile as T).also {
+                lockedResourceFileNames.add(name)
+            }
+        } catch (e: ClassCastException) {
+            throw ApkResourceException.Decode("Resource file $name is not ${resourceFile::class}.", e)
+        }
+    }
+
+    inner class ResourceFileEditor<T : ResourceFile> internal constructor(
+        private val resourceFile: T,
+    ) : Closeable {
+        fun use(block: (T) -> Unit) = block(resourceFile)
+        override fun close() {
+            lockedResourceFileNames.remove(resourceFile.name)
+        }
+    }
+
+    override fun flush() {
+        TODO("Not yet implemented")
+    }
+
+    /**
+     * Open a resource file, creating it if the file does not exist.
+     *
+     * @param path The resource file path.
+     * @return The corresponding [ResourceFiles],
+     */
+    fun openFile(path: String) = ResourceFiles(createHandle(path), archive)
+
+    private fun getPackageBlock() = packageBlock ?: throw ApkResourceException.MissingResourceTable
+
+    internal fun getOrCreateString(value: String) =
+        tableBlock?.stringPool?.getOrCreate(value) ?: throw ApkResourceException.MissingResourceTable
+
+    private fun Entry.set(resource: Resource) {
+        val existingEntryNameReference = specReference
+
+        // Sets this.specReference if the entry is not yet initialized.
+        // Sets this.specReference to 0 if the resource type of the existing entry changes.
+        ensureComplex(resource.isComplex)
+
+        if (existingEntryNameReference != 0) {
+            // Preserve the entry name by restoring the previous spec block reference (if present).
+            specReference = existingEntryNameReference
+        }
+
+        resource.write(this, this@ResourceContainer)
+        resourceTable.registerChanged(this)
+    }
+
+    /**
+     * Retrieve an [Entry] from the resource table.
+     *
+     * @param type The resource type.
+     * @param name The resource name.
+     * @param qualifiers The variant to use.
+     */
+    private fun getEntry(type: String, name: String, qualifiers: String?): Entry? {
+        val resourceId = try {
+            resourceTable.resolve("@$type/$name")
+        } catch (_: ApkResourceException.InvalidReference) {
+            return null
+        }
+
+        val config = ResConfig.parse(qualifiers)
+        return tableBlock?.resolveReference(resourceId)?.singleOrNull { it.resConfig == config }
+    }
+
+    /**
+     * Create a [ResourceFiles.Handle] that can be used to open a [ResourceFiles].
+     * This may involve looking it up in the resource table to find the actual location in the archive.
+     *
+     * @param path The path of the resource.
+     */
+    private fun createHandle(path: String): ResourceFiles.Handle {
+        if (path.startsWith("res/values")) throw ApkResourceException.Decode("Decoding the resource table as a file is not supported")
+
+        var onClose = {}
+        var archivePath = path
+
+        if (tableBlock != null && path.startsWith("res/") && path.count { it == '/' } == 2) {
+            val file = File(path)
+
+            val qualifiers = EncodeUtil.getQualifiersFromResFile(file)
+            val type = EncodeUtil.getTypeNameFromResFile(file)
+            val name = file.nameWithoutExtension
+
+            // The resource file names that the app developers used may have been minified, so we have to resolve it with the resource table.
+            // Example: res/drawable-hdpi/icon.png -> res/4a.png
+            getEntry(type, name, qualifiers)?.resValue?.valueAsString?.let {
+                archivePath = it
+            } ?: run {
+                // An entry for this specific resource file was not found in the resource table, so we have to register it after we save.
+                onClose = { setResource(type, name, StringResource(archivePath), qualifiers) }
+            }
+        }
+
+        return ResourceFiles.Handle(path, archivePath, onClose)
+    }
+
+    fun setResource(type: String, entryName: String, resource: Resource, qualifiers: String? = null) =
+        getPackageBlock().getOrCreate(qualifiers, type, entryName).also { it.set(resource) }.resourceId
+
+    fun setResources(type: String, resources: Map<String, Resource>, configuration: String? = null) {
+        getPackageBlock().getOrCreateSpecTypePair(type).getOrCreateTypeBlock(configuration).apply {
+            resources.forEach { (entryName, resource) -> getOrCreateEntry(entryName).set(resource) }
+        }
+    }
+
+    override fun flush() {
+        packageBlock?.name = archive
+    }
+}

arsclib-utils/src/main/kotlin/app/revanced/arsc/resource/ResourceFiles.kt

@@ -0,0 +1,91 @@
+package app.revanced.arsc.resource
+
+import app.revanced.arsc.ApkResourceException
+import app.revanced.arsc.archive.Archive
+import com.reandroid.archive.InputSource
+import com.reandroid.xml.XMLDocument
+import com.reandroid.xml.XMLException
+import java.io.*
+
+
+abstract class ResourceFile(val name: String) {
+    internal var realName: String? = null
+
+    class XmlResourceFile(name: String, val document: XMLDocument) : ResourceFile(name)
+    class BinaryResourceFile(name: String, var bytes: ByteArray) : ResourceFile(name)
+}
+
+
+class ResourceFiles private constructor(
+) : Closeable {
+
+    /**
+     * Instantiate a [ResourceFiles].
+     *
+     * @param handle The [Handle] associated with this file.
+     * @param archive The [Archive] that the file resides in.
+     */
+    internal constructor(handle: Handle, archive: Archive) : this(
+        handle,
+        archive,
+        try {
+            archive.read(handle.archivePath)
+        } catch (e: XMLException) {
+            throw ApkResourceException.Decode("Failed to decode XML while reading ${handle.virtualPath}", e)
+        } catch (e: IOException) {
+            throw ApkResourceException.Decode("Could not read ${handle.virtualPath}", e)
+        }
+    )
+
+    companion object {
+        const val DEFAULT_BUFFER_SIZE = 1024
+    }
+
+    var contents = readResult?.data ?: ByteArray(0)
+        set(value) {
+            pendingWrite = true
+            field = value
+        }
+
+    val exists = readResult != null
+
+    override fun toString() = handle.virtualPath
+
+    override fun close() {
+        if (pendingWrite) {
+            val path = handle.archivePath
+
+            if (isXmlResource) archive.writeXml(
+                path,
+                try {
+                    XMLDocument.load(inputStream())
+                } catch (e: XMLException) {
+                    throw ApkResourceException.Encode("Failed to parse XML while writing ${handle.virtualPath}", e)
+                }
+
+            ) else archive.writeRaw(path, contents)
+        }
+
+        handle.onClose()
+
+
+        archive.unlock(this)
+    }
+
+    fun inputStream(): InputStream = ByteArrayInputStream(contents)
+
+    fun outputStream(bufferSize: Int = DEFAULT_BUFFER_SIZE): OutputStream =
+        object : ByteArrayOutputStream(bufferSize) {
+            override fun close() {
+                this@ResourceFiles.contents = if (buf.size > count) buf.copyOf(count) else buf
+                super.close()
+            }
+        }
+
+    /**
+     * @param virtualPath The resource file path. Example: /res/drawable-hdpi/icon.png.
+     * @param archivePath The actual file path in the archive. Example: res/4a.png.
+     * @param onClose An action to perform when the file associated with this handle is closed
+     */
+    internal data class Handle(val virtualPath: String, val archivePath: String, val onClose: () -> Unit)
+}

arsclib-utils/src/main/kotlin/app/revanced/arsc/resource/ResourceTable.kt

@@ -0,0 +1,100 @@
+package app.revanced.arsc.resource
+
+import app.revanced.arsc.ApkResourceException
+import com.reandroid.apk.xmlencoder.EncodeException
+import com.reandroid.apk.xmlencoder.EncodeMaterials
+import com.reandroid.arsc.util.FrameworkTable
+import com.reandroid.arsc.value.Entry
+import com.reandroid.common.TableEntryStore
+
+/**
+ * A high-level API for resolving resources in the resource table, which spans the entire ApkBundle.
+ */
+class ResourceTable(base: ResourceContainer, all: Sequence<ResourceContainer>) {
+    private val packageName = base.tableBlock!!.name
+
+    /**
+     * A [TableEntryStore] used to decode XML.
+     */
+    internal val entryStore = TableEntryStore()
+
+    /**
+     * The [EncodeMaterials] to use for resolving resources and encoding XML.
+     */
+    internal val encodeMaterials: EncodeMaterials = object : EncodeMaterials() {
+        /*
+        Our implementation is more efficient because it does not have to loop through every single entry group
+        when the resource id cannot be found in the TableIdentifier, which does not update when you create a new resource.
+        It also looks at the entire table instead of just the current package.
+        */
+        override fun resolveLocalResourceId(type: String, name: String) = resolveLocal(type, name)
+    }
+
+    /**
+     * The resource mappings which are generated when the ApkBundle is created.
+     */
+    private val tableIdentifier = encodeMaterials.tableIdentifier
+
+    /**
+     * A table of all the resources that have been changed or added.
+     */
+    private val modifiedResources = HashMap<String, HashMap<String, Int>>()
+
+
+    /**
+     * Resolve a resource id for the specified resource.
+     * Cannot resolve resources from the android framework.
+     *
+     * @param type The type of the resource.
+     * @param name The name of the resource.
+     * @return The id of the resource.
+     */
+    fun resolveLocal(type: String, name: String) =
+        modifiedResources[type]?.get(name)
+            ?: tableIdentifier.get(packageName, type, name)?.resourceId
+            ?: throw ApkResourceException.InvalidReference(
+                type,
+                name
+            )
+
+    /**
+     * Resolve a resource id for the specified resource.
+     *
+     * @param reference The resource reference string.
+     * @return The id of the resource.
+     */
+    fun resolve(reference: String) = try {
+        encodeMaterials.resolveReference(reference)
+    } catch (e: EncodeException) {
+        throw ApkResourceException.InvalidReference(reference, e)
+    }
+
+    /**
+     * Notify the [ResourceTable] that an [Entry] has been created or modified.
+     */
+    internal fun registerChanged(entry: Entry) {
+        modifiedResources.getOrPut(entry.typeName, ::HashMap)[entry.name] = entry.resourceId
+    }
+
+    init {
+        all.forEach {
+            it.tableBlock?.let { table ->
+                entryStore.add(table)
+                tableIdentifier.load(table)
+            }
+
+            it.resourceTable = this
+        }
+
+        base.also {
+            encodeMaterials.currentPackage = it.tableBlock
+
+            it.tableBlock!!.frameWorks.forEach { fw ->
+                if (fw is FrameworkTable) {
+                    entryStore.add(fw)
+                    encodeMaterials.addFramework(fw)
+                }
+            }
+        }
+    }
+}

arsclib-utils/src/main/kotlin/app/revanced/arsc/xml/LazyXMLEncodeSource.kt

@@ -0,0 +1,56 @@
+package app.revanced.arsc.xml
+
+import app.revanced.arsc.resource.ResourceContainer
+import app.revanced.arsc.resource.boolean
+import com.reandroid.apk.xmlencoder.EncodeException
+import com.reandroid.apk.xmlencoder.XMLEncodeSource
+import com.reandroid.arsc.chunk.xml.ResXmlDocument
+import com.reandroid.xml.XMLDocument
+import com.reandroid.xml.XMLElement
+import com.reandroid.xml.source.XMLDocumentSource
+
+/**
+ * Archive input source to lazily encode an [XMLDocument] after it has been modified.
+ *
+ * @param name The file name of this input source.
+ * @param document The [XMLDocument] to encode.
+ * @param resources The [ResourceContainer] to use for encoding.
+ */
+internal class LazyXMLEncodeSource(
+    name: String,
+    val document: XMLDocument,
+    private val resources: ResourceContainer
+) : XMLEncodeSource(resources.resourceTable.encodeMaterials, XMLDocumentSource(name, document)) {
+    private var encoded = false
+
+    override fun getResXmlBlock(): ResXmlDocument {
+        if (encoded) return super.getResXmlBlock()
+
+        XMLEncodeSource(resources.resourceTable.encodeMaterials, XMLDocumentSource(name, document))
+        
+        fun XMLElement.registerIds() {
+            listAttributes().forEach { attr ->
+                if (!attr.value.startsWith("@+id/")) return@forEach
+
+                val name = attr.value.split('/').last()
+                resources.setResource("id", name, boolean(false))
+                attr.value = "@id/$name"
+            }
+
+            listChildElements().forEach { it.registerIds() }
+        }
+
+        // Handle all @+id/id_name references in the document.
+        document.documentElement.registerIds()
+
+        encoded = true
+
+        // This will call XMLEncodeSource.getResXmlBlock(),
+        // which will encode the document if it has not already been encoded.
+        try {
+            return super.getResXmlBlock()
+        } catch (e: EncodeException) {
+            throw EncodeException("Failed to encode $name", e)
+        }
+    }
+}

build.gradle.kts

@@ -1,71 +1,3 @@
 plugins {
-    kotlin("jvm") version "1.8.10"
-    `maven-publish`
-}
-
-group = "app.revanced"
-
-val githubUsername: String = project.findProperty("gpr.user") as? String ?: System.getenv("GITHUB_ACTOR")
-val githubPassword: String = project.findProperty("gpr.key") as? String ?: System.getenv("GITHUB_TOKEN")
-
-repositories {
-    mavenCentral()
-    maven {
-        url = uri("https://maven.pkg.github.com/revanced/multidexlib2")
-        credentials {
-            username = githubUsername
-            password = githubPassword
-        }
-    }
-}
-
-dependencies {
-    implementation("xpp3:xpp3:1.1.4c")
-    implementation("app.revanced:smali:2.5.3-a3836654")
-    implementation("app.revanced:multidexlib2:2.5.3-a3836654")
-    implementation("app.revanced:apktool-lib:2.7.0")
-
-    implementation("org.jetbrains.kotlin:kotlin-reflect:1.8.20-RC")
-    testImplementation("org.jetbrains.kotlin:kotlin-test:1.8.20-RC")
-}
-
-tasks {
-    test {
-        useJUnitPlatform()
-        testLogging {
-            events("PASSED", "SKIPPED", "FAILED")
-        }
-    }
-    processResources {
-        expand("projectVersion" to project.version)
-    }
-}
-
-java {
-    withSourcesJar()
-}
-
-kotlin {
-    jvmToolchain(11)
-}
-
-publishing {
-    repositories {
-        if (System.getenv("GITHUB_ACTOR") != null)
-            maven {
-                name = "GitHubPackages"
-                url = uri("https://maven.pkg.github.com/revanced/revanced-patcher")
-                credentials {
-                    username = System.getenv("GITHUB_ACTOR")
-                    password = System.getenv("GITHUB_TOKEN")
-                }
-            }
-        else
-            mavenLocal()
-    }
-    publications {
-        register<MavenPublication>("gpr") {
-            from(components["java"])
-        }
-    }
+    kotlin("jvm") version "1.8.20" apply false
 }

gradle.properties

@@ -1,2 +1,4 @@
+org.gradle.parallel=true
+org.gradle.caching=true
 kotlin.code.style = official
-version = 11.0.2-dev.1
+version = 11.0.4

gradle/wrapper/gradle-wrapper.properties

@@ -1,5 +1,7 @@
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
-distributionUrl=https\://services.gradle.org/distributions/gradle-8.1.1-all.zip
+distributionUrl=https\://services.gradle.org/distributions/gradle-8.2-bin.zip
+networkTimeout=10000
+validateDistributionUrl=true
 zipStoreBase=GRADLE_USER_HOME
 zipStorePath=wrapper/dists

gradlew

@@ -1,7 +1,7 @@
 #!/bin/sh
 
 #
-# Copyright <EFBFBD> 2015-2021 the original authors.
+# Copyright © 2015-2021 the original authors.
 #
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.
@@ -32,10 +32,10 @@
 #       Busybox and similar reduced shells will NOT work, because this script
 #       requires all of these POSIX shell features:
 #         * functions;
-#         * expansions <EFBFBD>$var<EFBFBD>, <EFBFBD>${var}<EFBFBD>, <EFBFBD>${var:-default}<EFBFBD>, <EFBFBD>${var+SET}<EFBFBD>,
-#           <EFBFBD>${var#prefix}<EFBFBD>, <EFBFBD>${var%suffix}<EFBFBD>, and <EFBFBD>$( cmd )<EFBFBD>;
-#         * compound commands having a testable exit status, especially <EFBFBD>case<EFBFBD>;
-#         * various built-in commands including <EFBFBD>command<EFBFBD>, <EFBFBD>set<EFBFBD>, and <EFBFBD>ulimit<EFBFBD>.
+#         * expansions «$var», «${var}», «${var:-default}», «${var+SET}»,
+#           «${var#prefix}», «${var%suffix}», and «$( cmd )»;
+#         * compound commands having a testable exit status, especially «case»;
+#         * various built-in commands including «command», «set», and «ulimit».
 #
 #   Important for patching:
 #
@@ -55,7 +55,7 @@
 #       Darwin, MinGW, and NonStop.
 #
 #   (3) This script is generated from the Groovy template
-#       https://github.com/gradle/gradle/blob/master/subprojects/plugins/src/main/resources/org/gradle/api/internal/plugins/unixStartScript.txt
+#       https://github.com/gradle/gradle/blob/HEAD/subprojects/plugins/src/main/resources/org/gradle/api/internal/plugins/unixStartScript.txt
 #       within the Gradle project.
 #
 #       You can find Gradle at https://github.com/gradle/gradle/.
@@ -80,13 +80,10 @@ do
     esac
 done
 
-APP_HOME=$( cd "${APP_HOME:-./}" && pwd -P ) || exit
-
-APP_NAME="Gradle"
+# This is normally unused
+# shellcheck disable=SC2034
 APP_BASE_NAME=${0##*/}
-
-# Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
-DEFAULT_JVM_OPTS='"-Xmx64m" "-Xms64m"'
+APP_HOME=$( cd "${APP_HOME:-./}" && pwd -P ) || exit
 
 # Use the maximum available, or set MAX_FD != -1 to use that value.
 MAX_FD=maximum
@@ -133,22 +130,29 @@ location of your Java installation."
     fi
 else
     JAVACMD=java
-    which java >/dev/null 2>&1 || die "ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
+    if ! command -v java >/dev/null 2>&1
+    then
+        die "ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
 
 Please set the JAVA_HOME variable in your environment to match the
 location of your Java installation."
+    fi
 fi
 
 # Increase the maximum file descriptors if we can.
 if ! "$cygwin" && ! "$darwin" && ! "$nonstop" ; then
     case $MAX_FD in #(
       max*)
+        # In POSIX sh, ulimit -H is undefined. That's why the result is checked to see if it worked.
+        # shellcheck disable=SC3045
         MAX_FD=$( ulimit -H -n ) ||
             warn "Could not query maximum file descriptor limit"
     esac
     case $MAX_FD in  #(
       '' | soft) :;; #(
       *)
+        # In POSIX sh, ulimit -n is undefined. That's why the result is checked to see if it worked.
+        # shellcheck disable=SC3045
         ulimit -n "$MAX_FD" ||
             warn "Could not set maximum file descriptor limit to $MAX_FD"
     esac
@@ -193,6 +197,10 @@ if "$cygwin" || "$msys" ; then
     done
 fi
 
+
+# Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
+DEFAULT_JVM_OPTS='"-Xmx64m" "-Xms64m"'
+
 # Collect all arguments for the java command;
 #   * $DEFAULT_JVM_OPTS, $JAVA_OPTS, and $GRADLE_OPTS can contain fragments of
 #     shell script including quotes and variable substitutions, so put them in
@@ -205,6 +213,12 @@ set -- \
         org.gradle.wrapper.GradleWrapperMain \
         "$@"
 
+# Stop when "xargs" is not available.
+if ! command -v xargs >/dev/null 2>&1
+then
+    die "xargs is not available"
+fi
+
 # Use "xargs" to parse quoted args.
 #
 # With -n1 it outputs one arg per line, with the quotes and backslashes removed.

gradlew.bat

@@ -14,7 +14,7 @@
 @rem limitations under the License.
 @rem
 
-@if "%DEBUG%" == "" @echo off
+@if "%DEBUG%"=="" @echo off
 @rem ##########################################################################
 @rem
 @rem  Gradle startup script for Windows
@@ -25,7 +25,8 @@
 if "%OS%"=="Windows_NT" setlocal
 
 set DIRNAME=%~dp0
-if "%DIRNAME%" == "" set DIRNAME=.
+if "%DIRNAME%"=="" set DIRNAME=.
+@rem This is normally unused
 set APP_BASE_NAME=%~n0
 set APP_HOME=%DIRNAME%
 
@@ -40,7 +41,7 @@ if defined JAVA_HOME goto findJavaFromJavaHome
 
 set JAVA_EXE=java.exe
 %JAVA_EXE% -version >NUL 2>&1
-if "%ERRORLEVEL%" == "0" goto execute
+if %ERRORLEVEL% equ 0 goto execute
 
 echo.
 echo ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
@@ -75,13 +76,15 @@ set CLASSPATH=%APP_HOME%\gradle\wrapper\gradle-wrapper.jar
 
 :end
 @rem End local scope for the variables with windows NT shell
-if "%ERRORLEVEL%"=="0" goto mainEnd
+if %ERRORLEVEL% equ 0 goto mainEnd
 
 :fail
 rem Set variable GRADLE_EXIT_CONSOLE if you need the _script_ return code instead of
 rem the _cmd.exe /c_ return code!
-if  not "" == "%GRADLE_EXIT_CONSOLE%" exit 1
-exit /b 1
+set EXIT_CODE=%ERRORLEVEL%
+if %EXIT_CODE% equ 0 set EXIT_CODE=1
+if not ""=="%GRADLE_EXIT_CONSOLE%" exit %EXIT_CODE%
+exit /b %EXIT_CODE%
 
 :mainEnd
 if "%OS%"=="Windows_NT" endlocal

revanced-patcher/build.gradle.kts

@@ -0,0 +1,61 @@
+plugins {
+    kotlin("jvm")
+    `maven-publish`
+}
+
+group = "app.revanced"
+
+dependencies {
+    implementation("xpp3:xpp3:1.1.4c")
+    implementation("app.revanced:smali:2.5.3-a3836654")
+    implementation("app.revanced:multidexlib2:2.5.3-a3836654")
+    implementation("io.github.reandroid:ARSCLib:1.1.7")
+    implementation(project(":arsclib-utils"))
+
+    implementation("org.jetbrains.kotlinx:kotlinx-coroutines-core:1.7.1")
+    implementation("org.jetbrains.kotlin:kotlin-reflect:1.8.20-RC")
+    testImplementation("org.jetbrains.kotlin:kotlin-test:1.8.20-RC")
+
+    compileOnly("com.google.android:android:4.1.1.4")
+}
+
+tasks {
+    test {
+        useJUnitPlatform()
+        testLogging {
+            events("PASSED", "SKIPPED", "FAILED")
+        }
+    }
+    processResources {
+        expand("projectVersion" to project.version)
+    }
+}
+
+java {
+    withSourcesJar()
+}
+
+kotlin {
+    jvmToolchain(11)
+}
+
+publishing {
+    repositories {
+        if (System.getenv("GITHUB_ACTOR") != null)
+            maven {
+                name = "GitHubPackages"
+                url = uri("https://maven.pkg.github.com/revanced/revanced-patcher")
+                credentials {
+                    username = System.getenv("GITHUB_ACTOR")
+                    password = System.getenv("GITHUB_TOKEN")
+                }
+            }
+        else
+            mavenLocal()
+    }
+    publications {
+        register<MavenPublication>("gpr") {
+            from(components["java"])
+        }
+    }
+}

revanced-patcher/settings.gradle.kts

@@ -0,0 +1 @@
+rootProject.name = "revanced-patcher"

revanced-patcher/src/main/kotlin/app/revanced/patcher/Context.kt

@@ -0,0 +1,113 @@
+package app.revanced.patcher
+
+import app.revanced.arsc.resource.ResourceContainer
+import app.revanced.patcher.apk.Apk
+import app.revanced.patcher.apk.ApkBundle
+import app.revanced.arsc.resource.ResourceFiles
+import app.revanced.patcher.util.method.MethodWalker
+import org.jf.dexlib2.iface.Method
+import org.w3c.dom.Document
+import java.io.Closeable
+import java.io.InputStream
+import java.io.StringWriter
+import javax.xml.parsers.DocumentBuilderFactory
+import javax.xml.transform.TransformerFactory
+import javax.xml.transform.dom.DOMSource
+import javax.xml.transform.stream.StreamResult
+
+/**
+ * A common class to constrain [Context] to [BytecodeContext] and [ResourceContext].
+ * @param apkBundle The [ApkBundle] for this context.
+ */
+sealed class Context(val apkBundle: ApkBundle)
+
+/**
+ * A context for the bytecode of an [Apk.Base] file.
+ *
+ * @param apkBundle The [ApkBundle] for this context.
+ */
+class BytecodeContext internal constructor(apkBundle: ApkBundle) : Context(apkBundle) {
+    /**
+     * The list of classes.
+     */
+    val classes = apkBundle.base.bytecodeData.classes
+
+    /**
+     * Create a [MethodWalker] instance for the current [BytecodeContext].
+     *
+     * @param startMethod The method to start at.
+     * @return A [MethodWalker] instance.
+     */
+    fun traceMethodCalls(startMethod: Method) = MethodWalker(this, startMethod)
+}
+
+/**
+ * A context for [Apk] file resources.
+ *
+ * @param apkBundle the [ApkBundle] for this context.
+ */
+class ResourceContext internal constructor(apkBundle: ApkBundle) : Context(apkBundle) {
+
+    /**
+     * Open an [DomFileEditor] for a given DOM file.
+     *
+     * @param inputStream The input stream to read the DOM file from.
+     * @return A [DomFileEditor] instance.
+     */
+    fun openXmlFile(inputStream: InputStream) = DomFileEditor(inputStream)
+}
+
+
+/**
+ * Open a [DomFileEditor] for a resource file in the archive.
+ *
+ * @see [ResourceContainer.openFile]
+ * @param path The resource file path.
+ * @return A [DomFileEditor].
+ */
+fun ResourceContainer.openXmlFile(path: String) = DomFileEditor(openFile(path))
+
+/**
+ * Wrapper for a file that can be edited as a dom document.
+ *
+ * @param inputStream the input stream to read the xml file from.
+ * @param onSave A callback that will be called when the editor is closed to save the file.
+ */
+class DomFileEditor internal constructor(
+    private val inputStream: InputStream,
+    private val onSave: ((String) -> Unit)? = null
+) : Closeable {
+    private var closed: Boolean = false
+
+    /**
+     * The document of the xml file.
+     */
+    val file: Document = DocumentBuilderFactory.newInstance().newDocumentBuilder().parse(inputStream)
+        .also(Document::normalize)
+
+    internal constructor(file: ResourceFiles) : this(
+        file.inputStream(),
+        {
+            file.contents = it.toByteArray()
+            file.close()
+        }
+    )
+
+    /**
+     * Closes the editor and writes back to the file.
+     */
+    override fun close() {
+        if (closed) return
+
+        inputStream.close()
+
+        onSave?.let { callback ->
+            // Save the updated file.
+            val writer = StringWriter()
+            TransformerFactory.newInstance().newTransformer().transform(DOMSource(file), StreamResult(writer))
+            callback(writer.toString())
+        }
+
+        closed = true
+    }
+}

revanced-patcher/src/main/kotlin/app/revanced/patcher/Patcher.kt

@@ -0,0 +1,222 @@
+package app.revanced.patcher
+
+import app.revanced.patcher.apk.Apk
+import app.revanced.patcher.extensions.PatchExtensions.dependencies
+import app.revanced.patcher.extensions.PatchExtensions.patchName
+import app.revanced.patcher.extensions.PatchExtensions.requiresIntegrations
+import app.revanced.patcher.fingerprint.method.impl.MethodFingerprint
+import app.revanced.patcher.fingerprint.method.impl.MethodFingerprint.Companion.resolveUsingLookupMap
+import app.revanced.patcher.patch.*
+import app.revanced.patcher.util.VersionReader
+import kotlinx.coroutines.flow.Flow
+import kotlinx.coroutines.flow.flow
+import lanchon.multidexlib2.BasicDexFileNamer
+import java.io.Closeable
+import java.io.File
+import java.util.function.Function
+
+typealias ExecutedPatchResults = Flow<Pair<String, PatchException?>>
+
+/**
+ * The ReVanced Patcher.
+ * @param options The options for the patcher.
+ * @param patches The patches to use.
+ * @param integrations The integrations to merge if necessary. Must be dex files or dex file container such as ZIP, APK or DEX files.
+ */
+class Patcher(private val options: PatcherOptions, patches: Iterable<PatchClass>, integrations: Iterable<File>) :
+    Function<Boolean, ExecutedPatchResults> {
+    private val context = PatcherContext(options, patches.toList(), integrations)
+    private val logger = options.logger
+
+    companion object {
+        /**
+         * The version of the ReVanced Patcher.
+         */
+        @JvmStatic
+        val version = VersionReader.read()
+
+        @Suppress("SpellCheckingInspection")
+        internal val dexFileNamer = BasicDexFileNamer()
+    }
+
+    init {
+        /**
+         * Returns true if at least one patches or its dependencies matches the given predicate.
+         */
+        fun PatchClass.anyRecursively(predicate: (PatchClass) -> Boolean): Boolean =
+            predicate(this) || dependencies?.any { it.java.anyRecursively(predicate) } == true
+
+        // Determine if merging integrations is required.
+        for (patch in context.patches) {
+            if (patch.anyRecursively { it.requiresIntegrations }) {
+                context.integrations.merge = true
+                break
+            }
+        }
+    }
+
+    /**
+     * Execute the patcher.
+     *
+     * @param stopOnError If true, the patches will stop on the first error.
+     * @return A pair of the name of the [Patch] and a [PatchException] if it failed.
+     */
+    override fun apply(stopOnError: Boolean) = flow {
+        /**
+         * Execute a [Patch] and its dependencies recursively.
+         *
+         * @param patchClass The [Patch] to execute.
+         * @param executedPatches A map of [Patch]es paired to a boolean indicating their success, to prevent infinite recursion.
+         */
+        suspend fun executePatch(
+            patchClass: PatchClass,
+            executedPatches: HashMap<String, ExecutedPatch>
+        ) {
+            val patchName = patchClass.patchName
+
+            // If the patch has already executed silently skip it.
+            if (executedPatches.contains(patchName)) {
+                if (!executedPatches[patchName]!!.success)
+                    throw PatchException("'$patchName' did not succeed previously")
+
+                logger.trace("Skipping '$patchName' because it has already been executed")
+
+                return
+            }
+
+            // Recursively execute all dependency patches.
+            patchClass.dependencies?.forEach { dependencyClass ->
+                val dependency = dependencyClass.java
+
+                try {
+                    executePatch(dependency, executedPatches)
+                } catch (throwable: Throwable) {
+                    throw PatchException(
+                        "'$patchName' depends on '${dependency.patchName}' " +
+                                "but the following exception was raised: ${throwable.cause?.stackTraceToString() ?: throwable.message}",
+                        throwable
+                    )
+                }
+            }
+
+            val isResourcePatch = ResourcePatch::class.java.isAssignableFrom(patchClass)
+            val patchInstance = patchClass.getDeclaredConstructor().newInstance()
+
+            // TODO: implement this in a more polymorphic way.
+            val patchContext = if (isResourcePatch) {
+                context.resourceContext
+            } else {
+                context.bytecodeContext.apply {
+                    val bytecodePatch = patchInstance as BytecodePatch
+                    bytecodePatch.fingerprints?.resolveUsingLookupMap(context.bytecodeContext)
+                }
+            }
+
+            logger.trace("Executing '$patchName' of type: ${if (isResourcePatch) "resource" else "bytecode"}")
+
+            var success = false
+            try {
+                patchInstance.execute(patchContext)
+
+                success = true
+            } catch (patchException: PatchException) {
+                throw patchException
+            } catch (throwable: Throwable) {
+                throw PatchException("Unhandled patch exception: ${throwable.message}", throwable)
+            } finally {
+                executedPatches[patchName] = ExecutedPatch(patchInstance, success)
+            }
+        }
+
+        if (context.integrations.merge) context.integrations.merge(logger)
+
+        logger.trace("Initialize lookup maps for method MethodFingerprint resolution")
+
+        MethodFingerprint.initializeFingerprintResolutionLookupMaps(context.bytecodeContext)
+
+        logger.info("Executing patches")
+
+        // Key is patch name.
+        LinkedHashMap<String, ExecutedPatch>().apply {
+            context.patches.forEach { patch ->
+                var exception: PatchException? = null
+
+                try {
+                    executePatch(patch, this)
+                } catch (patchException: PatchException) {
+                    exception = patchException
+                }
+
+                // TODO: only emit if the patch is not a closeable.
+                //  If it is a closeable, this should be done when closing the patch.
+                emit(patch.patchName to exception)
+
+                if (stopOnError && exception != null) return@flow
+            }
+        }.let {
+            it.values
+                .filter(ExecutedPatch::success)
+                .map(ExecutedPatch::patchInstance)
+                .filterIsInstance(Closeable::class.java)
+                .asReversed().forEach { patch ->
+                    try {
+                        patch.close()
+                    } catch (throwable: Throwable) {
+                        val patchException =
+                            if (throwable is PatchException) throwable
+                            else PatchException(throwable)
+
+                        val patchName = (patch as Patch<Context>).javaClass.patchName
+
+                        logger.error("Failed to close '$patchName': ${patchException.stackTraceToString()}")
+
+                        emit(patchName to patchException)
+
+                        // This is not failsafe. If a patch throws an exception while closing,
+                        // the other patches that depend on it may fail.
+                        if (stopOnError) return@flow
+                    }
+                }
+        }
+
+        MethodFingerprint.clearFingerprintResolutionLookupMaps()
+    }
+
+    /**
+     * Finish patching all [Apk]s.
+     *
+     * @return The [PatcherResult] of the [Patcher].
+     */
+    fun finish(): PatcherResult {
+        val patchResults = buildList {
+            logger.info("Processing patched apks")
+            options.apkBundle.cleanup(options).forEach { result ->
+                if (result.exception != null) {
+                    logger.error("Got exception while processing ${result.apk}: ${result.exception.stackTraceToString()}")
+                    return@forEach
+                }
+
+                val patch = result.let {
+                    when (it.apk) {
+                        is Apk.Base -> PatcherResult.Patch.Base(it.apk)
+                        is Apk.Split -> PatcherResult.Patch.Split(it.apk)
+                    }
+                }
+
+                add(patch)
+
+                logger.info("Patched ${result.apk}")
+            }
+        }
+
+        return PatcherResult(patchResults)
+    }
+}
+
+/**
+ * A result of executing a [Patch].
+ *
+ * @param patchInstance The instance of the [Patch] that was executed.
+ * @param success The result of the [Patch].
+ */
+internal data class ExecutedPatch(val patchInstance: Patch<Context>, val success: Boolean)

revanced-patcher/src/main/kotlin/app/revanced/patcher/PatcherContext.kt

@@ -0,0 +1,55 @@
+package app.revanced.patcher
+
+import app.revanced.patcher.logging.Logger
+import app.revanced.patcher.patch.PatchClass
+import app.revanced.patcher.util.ClassMerger.merge
+import lanchon.multidexlib2.MultiDexIO
+import java.io.File
+
+class PatcherContext(
+    options: PatcherOptions,
+    internal val patches: List<PatchClass>,
+    integrations: Iterable<File>
+) {
+    internal val integrations = Integrations(this, integrations)
+    internal val bytecodeContext = BytecodeContext(options.apkBundle)
+    internal val resourceContext = ResourceContext(options.apkBundle)
+
+    internal class Integrations(val context: PatcherContext, private val dexContainers: Iterable<File>) {
+        var merge = false
+
+        /**
+         * Merge integrations.
+         * @param logger A logger.
+         */
+        fun merge(logger: Logger) {
+            context.bytecodeContext.classes.apply {
+                for (integrations in dexContainers) {
+                    logger.info("Merging $integrations")
+
+                    for (classDef in MultiDexIO.readDexFile(true, integrations, Patcher.dexFileNamer, null, null).classes) {
+                        val type = classDef.type
+
+                        val existingClassIndex = this.indexOfFirst { it.type == type }
+                        if (existingClassIndex == -1) {
+                            logger.trace("Merging type $type")
+                            add(classDef)
+                            continue
+                        }
+
+
+                        logger.trace("Type $type exists. Adding missing methods and fields.")
+
+                        get(existingClassIndex).apply {
+                            merge(classDef, context.bytecodeContext, logger).let { mergedClass ->
+                                if (mergedClass !== this) // referential equality check
+                                    set(existingClassIndex, mergedClass)
+                            }
+                        }
+
+                    }
+                }
+            }
+        }
+    }
+}

revanced-patcher/src/main/kotlin/app/revanced/patcher/PatcherOptions.kt

@@ -0,0 +1,14 @@
+package app.revanced.patcher
+
+import app.revanced.patcher.apk.ApkBundle
+import app.revanced.patcher.logging.Logger
+
+/**
+ * Options for the [Patcher].
+ * @param apkBundle The [ApkBundle].
+ * @param logger Custom logger implementation for the [Patcher].
+ */
+class PatcherOptions(
+    internal val apkBundle: ApkBundle,
+    internal val logger: Logger = Logger.Nop
+)

revanced-patcher/src/main/kotlin/app/revanced/patcher/PatcherResult.kt

@@ -0,0 +1,33 @@
+package app.revanced.patcher
+
+import app.revanced.patcher.apk.Apk
+import java.io.File
+
+/**
+ * The result of a patcher.
+ * @param apkFiles The patched [Apk] files.
+ */
+data class PatcherResult(val apkFiles: List<Patch>) {
+
+    /**
+     * The result of a patch.
+     *
+     * @param apk The patched [Apk] file.
+     */
+    sealed class Patch(val apk: Apk) {
+
+        /**
+         * The result of a patch of an [Apk.Split] file.
+         *
+         * @param apk The patched [Apk.Split] file.
+         */
+        class Split(apk: Apk.Split) : Patch(apk)
+
+        /**
+         * The result of a patch of an [Apk.Split] file.
+         *
+         * @param apk The patched [Apk.Base] file.
+         */
+        class Base(apk: Apk.Base) : Patch(apk)
+    }
+}

revanced-patcher/src/main/kotlin/app/revanced/patcher/annotation/MetadataAnnotation.kt

@@ -26,6 +26,7 @@ annotation class Description(
  * @param version The version of a [Patch].
  */
 @Target(AnnotationTarget.CLASS)
+@Deprecated("This annotation is deprecated and will be removed in the future.")
 annotation class Version(
     val version: String,
 )

revanced-patcher/src/main/kotlin/app/revanced/patcher/apk/Apk.kt

@@ -0,0 +1,285 @@
+@file:Suppress("MemberVisibilityCanBePrivate")
+
+package app.revanced.patcher.apk
+
+import app.revanced.arsc.ApkResourceException
+import app.revanced.arsc.archive.Archive
+import app.revanced.patcher.Patcher
+import app.revanced.patcher.PatcherOptions
+import app.revanced.patcher.logging.asArscLogger
+import app.revanced.patcher.util.ProxyBackedClassList
+import com.reandroid.apk.ApkModule
+import com.reandroid.apk.xmlencoder.EncodeException
+import com.reandroid.archive.InputSource
+import com.reandroid.arsc.chunk.xml.AndroidManifestBlock
+import com.reandroid.arsc.value.ResConfig
+import lanchon.multidexlib2.*
+import org.jf.dexlib2.Opcodes
+import org.jf.dexlib2.dexbacked.DexBackedDexFile
+import org.jf.dexlib2.iface.DexFile
+import org.jf.dexlib2.iface.MultiDexContainer
+import org.jf.dexlib2.writer.io.MemoryDataStore
+import java.io.File
+
+/**
+ * An [Apk] file.
+ */
+sealed class Apk private constructor(module: ApkModule) {
+    /**
+     * A wrapper around the zip archive of this [Apk].
+     *
+     * @see Archive
+     */
+    private val archive = Archive(module)
+
+    /**
+     * The metadata of the [Apk].
+     */
+    val packageMetadata = PackageMetadata(module.androidManifestBlock)
+
+    /**
+     * Refresh updated resources and close any open files.
+     *
+     * @param options The [PatcherOptions] of the [Patcher].
+     */
+    internal open fun cleanup(options: PatcherOptions) {
+        try {
+            archive.cleanup(options.logger.asArscLogger())
+        } catch (e: EncodeException) {
+            throw ApkResourceException.Encode(e.message!!, e)
+        }
+
+        archive.mainPackageResources.refreshPackageName()
+    }
+
+    /**
+     * Write the [Apk] to a file.
+     *
+     * @param output The target file.
+     */
+    fun write(output: File) = archive.save(output)
+
+    companion object {
+        const val MANIFEST_FILE_NAME = "AndroidManifest.xml"
+
+        /**
+         * Determine the [Module] and [Type] of an [ApkModule].
+         *
+         * @return A [Pair] containing the [Module] and [Type] of the [ApkModule].
+         */
+        fun ApkModule.identify(): Pair<Module, Type> {
+            val manifestElement = androidManifestBlock.manifestElement
+            return when {
+                isBaseModule -> Module.Main to Type.Base
+                // The module is a base apk for a dynamic feature module if the "isFeatureModule" attribute is set to true.
+                manifestElement.searchAttributeByName("isFeatureModule")?.valueAsBoolean == true -> Module.DynamicFeature(
+                    split
+                ) to Type.Base
+
+                else -> {
+                    val module = manifestElement.searchAttributeByName("configForSplit")
+                    ?.let { Module.DynamicFeature(it.valueAsString) } ?: Module.Main
+
+                    // Examples:
+                    // config.xhdpi
+                    // df_my_feature.config.en
+                    val config = this.split.split(".").last()
+
+                    val type = when {
+                        // Language splits have a two-letter country code.
+                        config.length == 2 -> Type.Language(config)
+                        // Library splits use the target CPU architecture.
+                        Split.Library.architectures.contains(config) -> Type.Library(config)
+                        // Asset splits use the density.
+                        ResConfig.Density.valueOf(config) != null -> Type.Asset(config)
+                        else -> throw IllegalArgumentException("Invalid split config: $config")
+                    }
+
+                    module to type
+                }
+            }
+        }
+    }
+
+    internal inner class BytecodeData {
+        private val opcodes: Opcodes
+
+        /**
+         * The classes and proxied classes of the [Base] apk file.
+         */
+        val classes: ProxyBackedClassList
+
+        init {
+            MultiDexContainerBackedDexFile(object : MultiDexContainer<DexBackedDexFile> {
+                // Load all dex files from the apk module and create a dex entry for each of them.
+                private val entries = archive.readDexFiles().associateBy { it.name }
+                    .mapValues { (name, inputSource) ->
+                        BasicDexEntry(
+                            this,
+                            name,
+                            RawDexIO.readRawDexFile(inputSource.openStream(), inputSource.length, null)
+                        )
+                    }
+
+                override fun getDexEntryNames() = entries.keys.toList()
+                override fun getEntry(entryName: String) = entries[entryName]
+            }).let {
+                opcodes = it.opcodes
+                classes = ProxyBackedClassList(it.classes)
+            }
+        }
+
+        /**
+         * Write [classes] to the archive.
+         */
+        internal fun writeDexFiles() {
+            // Create patched dex files.
+            mutableMapOf<String, MemoryDataStore>().also {
+                val newDexFile = object : DexFile {
+                    override fun getClasses() =
+                        this@BytecodeData.classes.also(ProxyBackedClassList::applyProxies).toSet()
+                    override fun getOpcodes() = this@BytecodeData.opcodes
+                }
+
+                // Write modified dex files.
+                MultiDexIO.writeDexFile(
+                    true, -1, // Core count.
+                    it, Patcher.dexFileNamer, newDexFile, DexIO.DEFAULT_MAX_DEX_POOL_SIZE, null
+                )
+            }.forEach { (name, store) ->
+                val dexFileInputSource = object : InputSource(name) {
+                    override fun openStream() = store.readAt(0)
+                }
+
+                archive.write(dexFileInputSource)
+            }
+        }
+    }
+
+    /**
+     * Metadata about an [Apk] file.
+     *
+     * @param packageName The package name of the [Apk] file.
+     * @param packageVersion The package version of the [Apk] file.
+     */
+    data class PackageMetadata(val packageName: String?, val packageVersion: String?) {
+        internal constructor(manifestBlock: AndroidManifestBlock) : this(
+            manifestBlock.packageName,
+            manifestBlock.versionName
+        )
+    }
+
+    /**
+     * An [Apk] of type [Split].
+     *
+     * @param config The device configuration associated with this [Split], such as arm64_v8a, en or xhdpi.
+     * @see Apk
+     */
+    sealed class Split(val config: String, module: ApkModule) : Apk(module) {
+        override fun toString() = "split_config.$config.apk"
+
+        /**
+         * The split apk file which contains libraries.
+         *
+         * @see Split
+         */
+        class Library internal constructor(config: String, module: ApkModule) : Split(config, module) {
+            companion object {
+                /**
+                 * A set of all architectures supported by android.
+                 */
+                val architectures = setOf("armeabi_v7a", "arm64_v8a", "x86", "x86_64")
+            }
+        }
+
+        /**
+         * The split apk file which contains language strings.
+         *
+         * @see Split
+         */
+        class Language internal constructor(config: String, module: ApkModule) : Split(config, module)
+
+        /**
+         * The split apk file which contains assets.
+         *
+         * @see Split
+         */
+        class Asset internal constructor(config: String, module: ApkModule) : Split(config, module)
+    }
+
+    /**
+     * The base [Apk] file..
+     *
+     * @see Apk
+     */
+    class Base internal constructor(module: ApkModule) : Apk(module) {
+        /**
+         * Data of the [Base] apk file.
+         */
+        internal val bytecodeData = BytecodeData()
+
+        override fun toString() = "base.apk"
+
+        override fun cleanup(options: PatcherOptions) {
+            super.cleanup(options)
+
+            options.logger.info("Writing patched dex files")
+            bytecodeData.writeDexFiles()
+        }
+    }
+
+    /**
+     * The module that the [ApkModule] belongs to.
+     */
+    sealed class Module {
+        /**
+         * The default [Module] that is always installed by software repositories.
+         */
+        object Main : Module()
+
+        /**
+         * A [Module] that can be installed later by software repositories when requested by the application.
+         *
+         * @param name The name of the feature.
+         */
+        data class DynamicFeature(val name: String) : Module()
+    }
+
+    /**
+     * The type of the [ApkModule].
+     */
+    sealed class Type {
+        /**
+         * The main Apk of a [Module].
+         */
+        object Base : Type()
+
+        /**
+         * A superclass for all split configuration types.
+         *
+         * @param target The target device configuration.
+         */
+        sealed class SplitConfig(val target: String) : Type()
+
+        /**
+         * The [Type] of an apk containing native libraries.
+         *
+         * @param architecture The target CPU architecture.
+         */
+        data class Library(val architecture: String) : SplitConfig(architecture)
+
+        /**
+         * The [Type] for an Apk containing language resources.
+         *
+         * @param language The target language code.
+         */
+        data class Language(val language: String) : SplitConfig(language)
+
+        /**
+         * The [Type] for an Apk containing assets.
+         *
+         * @param pixelDensity The target screen density.
+         */
+        data class Asset(val pixelDensity: String) : SplitConfig(pixelDensity)
+    }
+}

revanced-patcher/src/main/kotlin/app/revanced/patcher/apk/ApkBundle.kt

@@ -0,0 +1,105 @@
+@file:Suppress("MemberVisibilityCanBePrivate")
+
+package app.revanced.patcher.apk
+
+import app.revanced.arsc.ApkResourceException
+import app.revanced.arsc.resource.ResourceTable
+import app.revanced.patcher.Patcher
+import app.revanced.patcher.PatcherOptions
+import app.revanced.patcher.apk.Apk.Companion.identify
+import com.reandroid.apk.ApkModule
+import java.io.File
+
+/**
+ * An [Apk] file of type [Apk.Split].
+ *
+ * @param files A list of apk files to load.
+ */
+class ApkBundle(files: List<File>) : Sequence<Apk> {
+    /**
+     * The [Apk.Base] of this [ApkBundle].
+     */
+    val base: Apk.Base
+
+    /**
+     * A map containing all the [Apk.Split]s in this bundle associated by their configuration.
+     */
+    val splits: Map<String, Apk.Split>?
+
+    init {
+        var baseApk: Apk.Base? = null
+
+        splits = buildMap {
+            files.forEach {
+                val apk = ApkModule.loadApkFile(it)
+                val (module, type) = apk.identify()
+                if (module is Apk.Module.DynamicFeature) {
+                    return@forEach // Dynamic feature modules are not supported yet.
+                }
+
+                when (type) {
+                    Apk.Type.Base -> {
+                        if (baseApk != null) {
+                            throw IllegalArgumentException("Cannot have more than one base apk")
+                        }
+                        baseApk = Apk.Base(apk)
+                    }
+
+                    is Apk.Type.SplitConfig -> {
+                        val target = type.target
+                        if (this.contains(target)) {
+                            throw IllegalArgumentException("Duplicate split: $target")
+                        }
+
+                        val constructor = when (type) {
+                            is Apk.Type.Asset -> Apk.Split::Asset
+                            is Apk.Type.Library -> Apk.Split::Library
+                            is Apk.Type.Language -> Apk.Split::Language
+                        }
+
+                        this[target] = constructor(target, apk)
+                    }
+                }
+            }
+        }.takeIf { it.isNotEmpty() }
+
+        base = baseApk ?: throw IllegalArgumentException("Base apk not found")
+    }
+
+    /**
+     * The [ResourceTable] of this [ApkBundle].
+     */
+    val resources = ResourceTable(base.resources, map { it.resources })
+
+    override fun iterator() = sequence {
+        yield(base)
+        splits?.values?.let {
+            yieldAll(it)
+        }
+    }.iterator()
+
+    /**
+     * Refresh all updated resources in an [ApkBundle].
+     *
+     * @param options The [PatcherOptions] of the [Patcher].
+     * @return A sequence of the [Apk] files which are being refreshed.
+     */
+    internal fun cleanup(options: PatcherOptions) = map {
+        var exception: ApkResourceException? = null
+        try {
+            it.cleanup(options)
+        } catch (e: ApkResourceException) {
+            exception = e
+        }
+
+        SplitApkResult(it, exception)
+    }
+
+    /**
+     * The result of writing an [Apk] file.
+     *
+     * @param apk The corresponding [Apk] file.
+     * @param exception The optional [ApkResourceException] when an exception occurred.
+     */
+    data class SplitApkResult(val apk: Apk, val exception: ApkResourceException? = null)
+}

revanced-patcher/src/main/kotlin/app/revanced/patcher/extensions/PatchExtensions.kt

@@ -4,10 +4,10 @@ import app.revanced.patcher.annotation.Compatibility
 import app.revanced.patcher.annotation.Description
 import app.revanced.patcher.annotation.Name
 import app.revanced.patcher.annotation.Version
-import app.revanced.patcher.data.Context
 import app.revanced.patcher.extensions.AnnotationExtensions.findAnnotationRecursively
 import app.revanced.patcher.patch.OptionsContainer
 import app.revanced.patcher.patch.Patch
+import app.revanced.patcher.patch.PatchClass
 import app.revanced.patcher.patch.PatchOptions
 import app.revanced.patcher.patch.annotations.DependsOn
 import app.revanced.patcher.patch.annotations.RequiresIntegrations
@@ -19,49 +19,50 @@ object PatchExtensions {
     /**
      * The name of a [Patch].
      */
-    val Class<out Patch<Context>>.patchName: String
+    val PatchClass.patchName: String
         get() = findAnnotationRecursively(Name::class)?.name ?: this.simpleName
 
     /**
      * The version of a [Patch].
      */
-    val Class<out Patch<Context>>.version
+    @Deprecated("This property is deprecated and will be removed in the future.")
+    val PatchClass.version
         get() = findAnnotationRecursively(Version::class)?.version
 
     /**
      * Weather or not a [Patch] should be included.
      */
-    val Class<out Patch<Context>>.include
+    val PatchClass.include
         get() = findAnnotationRecursively(app.revanced.patcher.patch.annotations.Patch::class)!!.include
 
     /**
      * The description of a [Patch].
      */
-    val Class<out Patch<Context>>.description
+    val PatchClass.description
         get() = findAnnotationRecursively(Description::class)?.description
 
     /**
      * The dependencies of a [Patch].
      */
-    val Class<out Patch<Context>>.dependencies
+    val PatchClass.dependencies
         get() = findAnnotationRecursively(DependsOn::class)?.dependencies
 
     /**
      * The packages a [Patch] is compatible with.
      */
-    val Class<out Patch<Context>>.compatiblePackages
+    val PatchClass.compatiblePackages
         get() = findAnnotationRecursively(Compatibility::class)?.compatiblePackages
 
     /**
      * Weather or not a [Patch] requires integrations.
      */
-    internal val Class<out Patch<Context>>.requiresIntegrations
+    internal val PatchClass.requiresIntegrations
         get() = findAnnotationRecursively(RequiresIntegrations::class) != null
 
     /**
      * The options of a [Patch].
      */
-    val Class<out Patch<Context>>.options: PatchOptions?
+    val PatchClass.options: PatchOptions?
         get() = kotlin.companionObject?.let { cl ->
             if (cl.visibility != KVisibility.PUBLIC) return null
             kotlin.companionObjectInstance?.let {

revanced-patcher/src/main/kotlin/app/revanced/patcher/fingerprint/method/impl/MethodFingerprint.kt

@@ -0,0 +1,513 @@
+package app.revanced.patcher.fingerprint.method.impl
+
+import app.revanced.patcher.BytecodeContext
+import app.revanced.patcher.extensions.MethodFingerprintExtensions.fuzzyPatternScanMethod
+import app.revanced.patcher.fingerprint.Fingerprint
+import app.revanced.patcher.fingerprint.method.annotation.FuzzyPatternScanMethod
+import app.revanced.patcher.patch.PatchException
+import app.revanced.patcher.util.proxy.ClassProxy
+import org.jf.dexlib2.AccessFlags
+import org.jf.dexlib2.Opcode
+import org.jf.dexlib2.iface.ClassDef
+import org.jf.dexlib2.iface.Method
+import org.jf.dexlib2.iface.instruction.Instruction
+import org.jf.dexlib2.iface.instruction.ReferenceInstruction
+import org.jf.dexlib2.iface.reference.StringReference
+import org.jf.dexlib2.util.MethodUtil
+import java.util.*
+
+private typealias StringMatch = MethodFingerprintResult.MethodFingerprintScanResult.StringsScanResult.StringMatch
+private typealias StringsScanResult = MethodFingerprintResult.MethodFingerprintScanResult.StringsScanResult
+private typealias MethodClassPair = Pair<Method, ClassDef>
+
+/**
+ * A fingerprint to resolve methods.
+ *
+ * @param returnType The method's return type compared using [String.startsWith].
+ * @param accessFlags The method's exact access flags using values of [AccessFlags].
+ * @param parameters The parameters of the method. Partial matches allowed and follow the same rules as [returnType].
+ * @param opcodes An opcode pattern of the method's instructions. Wildcard or unknown opcodes can be specified by `null`.
+ * @param strings A list of the method's strings compared each using [String.contains].
+ * @param customFingerprint A custom condition for this fingerprint.
+ */
+abstract class MethodFingerprint(
+    internal val returnType: String? = null,
+    internal val accessFlags: Int? = null,
+    internal val parameters: Iterable<String>? = null,
+    internal val opcodes: Iterable<Opcode?>? = null,
+    internal val strings: Iterable<String>? = null,
+    internal val customFingerprint: ((methodDef: Method, classDef: ClassDef) -> Boolean)? = null
+) : Fingerprint {
+    /**
+     * The result of the [MethodFingerprint].
+     */
+    var result: MethodFingerprintResult? = null
+
+    companion object {
+        /**
+         * A list of methods and the class they were found in.
+         */
+        private val methods = mutableListOf<MethodClassPair>()
+
+        /**
+         * Lookup map for methods keyed to the methods access flags, return type and parameter.
+         */
+        private val methodSignatureLookupMap = mutableMapOf<String, MutableList<MethodClassPair>>()
+
+        /**
+         * Lookup map for methods keyed to the strings contained in the method.
+         */
+        private val methodStringsLookupMap = mutableMapOf<String, MutableList<MethodClassPair>>()
+
+        /**
+         * Appends a string based on the parameter reference types of this method.
+         */
+        private fun StringBuilder.appendParameters(parameters: Iterable<CharSequence>) {
+            // Maximum parameters to use in the signature key.
+            // Some apps have methods with an incredible number of parameters (over 100 parameters have been seen).
+            // To keep the signature map from becoming needlessly bloated,
+            // group together in the same map entry all methods with the same access/return and 5 or more parameters.
+            // The value of 5 was chosen based on local performance testing and is not set in stone.
+            val maxSignatureParameters = 5
+            // Must append a unique value before the parameters to distinguish this key includes the parameters.
+            // If this is not appended, then methods with no parameters
+            // will collide with different keys that specify access/return but omit the parameters.
+            append("p:")
+            parameters.forEachIndexed { index, parameter ->
+                if (index >= maxSignatureParameters) return
+                append(parameter.first())
+            }
+        }
+
+        /**
+         * Initializes lookup maps for [MethodFingerprint] resolution
+         * using attributes of methods such as the method signature or strings.
+         *
+         * @param context The [BytecodeContext] containing the classes to initialize the lookup maps with.
+         */
+        internal fun initializeFingerprintResolutionLookupMaps(context: BytecodeContext) {
+            fun MutableMap<String, MutableList<MethodClassPair>>.add(
+                key: String,
+                methodClassPair: MethodClassPair
+            ) {
+                var methodClassPairs = this[key]
+
+                methodClassPairs ?: run {
+                    methodClassPairs = LinkedList<MethodClassPair>().also { this[key] = it }
+                }
+
+                methodClassPairs!!.add(methodClassPair)
+            }
+
+            if (methods.isNotEmpty()) throw PatchException("Map already initialized")
+
+            context.classes.forEach { classDef ->
+                classDef.methods.forEach { method ->
+                    val methodClassPair = method to classDef
+
+                    // For fingerprints with no access or return type specified.
+                    methods += methodClassPair
+
+                    val accessFlagsReturnKey = method.accessFlags.toString() + method.returnType.first()
+
+                    // Add <access><returnType> as the key.
+                    methodSignatureLookupMap.add(accessFlagsReturnKey, methodClassPair)
+
+                    // Add <access><returnType>[parameters] as the key.
+                    methodSignatureLookupMap.add(
+                        buildString {
+                            append(accessFlagsReturnKey)
+                            appendParameters(method.parameterTypes)
+                        },
+                        methodClassPair
+                    )
+
+                    // Add strings contained in the method as the key.
+                    method.implementation?.instructions?.forEach instructions@{ instruction ->
+                        if (instruction.opcode != Opcode.CONST_STRING && instruction.opcode != Opcode.CONST_STRING_JUMBO)
+                            return@instructions
+
+                        val string = ((instruction as ReferenceInstruction).reference as StringReference).string
+
+                        methodStringsLookupMap.add(string, methodClassPair)
+                    }
+
+                    // In the future, the class type could be added to the lookup map.
+                    // This would require MethodFingerprint to be changed to include the class type.
+                }
+            }
+        }
+
+        /**
+         * Clears the internal lookup maps created in [initializeFingerprintResolutionLookupMaps]
+         */
+        internal fun clearFingerprintResolutionLookupMaps() {
+            methods.clear()
+            methodSignatureLookupMap.clear()
+            methodStringsLookupMap.clear()
+        }
+
+        /**
+         * Resolve a list of [MethodFingerprint] using the lookup map built by [initializeFingerprintResolutionLookupMaps].
+         *
+         * [MethodFingerprint] resolution is fast, but if many are present they can consume a noticeable
+         * amount of time because they are resolved in sequence.
+         *
+         * For apps with many fingerprints, resolving performance can be improved by:
+         * - Slowest: Specify [opcodes] and nothing else.
+         * - Fast: Specify [accessFlags], [returnType].
+         * - Faster: Specify [accessFlags], [returnType] and [parameters].
+         * - Fastest: Specify [strings], with at least one string being an exact (non-partial) match.
+         */
+        internal fun Iterable<MethodFingerprint>.resolveUsingLookupMap(context: BytecodeContext) {
+            if (methods.isEmpty()) throw PatchException("lookup map not initialized")
+
+            for (fingerprint in this) {
+                fingerprint.resolveUsingLookupMap(context)
+            }
+        }
+
+        /**
+         * Resolve a [MethodFingerprint] using the lookup map built by [initializeFingerprintResolutionLookupMaps].
+         *
+         * [MethodFingerprint] resolution is fast, but if many are present they can consume a noticeable
+         * amount of time because they are resolved in sequence.
+         *
+         * For apps with many fingerprints, resolving performance can be improved by:
+         * - Slowest: Specify [opcodes] and nothing else.
+         * - Fast: Specify [accessFlags], [returnType].
+         * - Faster: Specify [accessFlags], [returnType] and [parameters].
+         * - Fastest: Specify [strings], with at least one string being an exact (non-partial) match.
+         */
+        internal fun MethodFingerprint.resolveUsingLookupMap(context: BytecodeContext): Boolean {
+            /**
+             * Lookup [MethodClassPair]s that match the methods strings present in a [MethodFingerprint].
+             *
+             * @return A list of [MethodClassPair]s that match the methods strings present in a [MethodFingerprint].
+             */
+            fun MethodFingerprint.methodStringsLookup(): List<MethodClassPair>? {
+                strings?.forEach {
+                    val methods = methodStringsLookupMap[it]
+                    if (methods != null) return methods
+                }
+                return null
+            }
+
+            /**
+             * Lookup [MethodClassPair]s that match the method signature present in a [MethodFingerprint].
+             *
+             * @return A list of [MethodClassPair]s that match the method signature present in a [MethodFingerprint].
+             */
+            fun MethodFingerprint.methodSignatureLookup(): List<MethodClassPair> {
+                if (accessFlags == null) return methods
+
+                var returnTypeValue = returnType
+                if (returnTypeValue == null) {
+                    if (AccessFlags.CONSTRUCTOR.isSet(accessFlags)) {
+                        // Constructors always have void return type
+                        returnTypeValue = "V"
+                    } else {
+                        return methods
+                    }
+                }
+
+                val key = buildString {
+                    append(accessFlags)
+                    append(returnTypeValue.first())
+                    if (parameters != null) appendParameters(parameters)
+                }
+                return methodSignatureLookupMap[key] ?: return emptyList()
+            }
+
+            /**
+             * Resolve a [MethodFingerprint] using a list of [MethodClassPair].
+             *
+             * @return True if the resolution was successful, false otherwise.
+             */
+            fun MethodFingerprint.resolveUsingMethodClassPair(classMethods: Iterable<MethodClassPair>): Boolean {
+                classMethods.forEach { classAndMethod ->
+                    if (resolve(context, classAndMethod.first, classAndMethod.second)) return true
+                }
+                return false
+            }
+
+            val methodsWithSameStrings = methodStringsLookup()
+            if (methodsWithSameStrings != null) if (resolveUsingMethodClassPair(methodsWithSameStrings)) return true
+
+            // No strings declared or none matched (partial matches are allowed).
+            // Use signature matching.
+            return resolveUsingMethodClassPair(methodSignatureLookup())
+        }
+
+        /**
+         * Resolve a list of [MethodFingerprint] against a list of [ClassDef].
+         *
+         * @param classes The classes on which to resolve the [MethodFingerprint] in.
+         * @param context The [BytecodeContext] to host proxies.
+         * @return True if the resolution was successful, false otherwise.
+         */
+        fun Iterable<MethodFingerprint>.resolve(context: BytecodeContext, classes: Iterable<ClassDef>) {
+            for (fingerprint in this) // For each fingerprint...
+                classes@ for (classDef in classes) // ...search through all classes for the MethodFingerprint
+                    if (fingerprint.resolve(context, classDef))
+                        break@classes // ...if the resolution succeeded, continue with the next MethodFingerprint.
+        }
+
+        /**
+         * Resolve a [MethodFingerprint] against a [ClassDef].
+         *
+         * @param forClass The class on which to resolve the [MethodFingerprint] in.
+         * @param context The [BytecodeContext] to host proxies.
+         * @return True if the resolution was successful, false otherwise.
+         */
+        fun MethodFingerprint.resolve(context: BytecodeContext, forClass: ClassDef): Boolean {
+            for (method in forClass.methods)
+                if (this.resolve(context, method, forClass))
+                    return true
+            return false
+        }
+
+        /**
+         * Resolve a [MethodFingerprint] against a [Method].
+         *
+         * @param method The class on which to resolve the [MethodFingerprint] in.
+         * @param forClass The class on which to resolve the [MethodFingerprint].
+         * @param context The [BytecodeContext] to host proxies.
+         * @return True if the resolution was successful or if the fingerprint is already resolved, false otherwise.
+         */
+        fun MethodFingerprint.resolve(context: BytecodeContext, method: Method, forClass: ClassDef): Boolean {
+            val methodFingerprint = this
+
+            if (methodFingerprint.result != null) return true
+
+            if (methodFingerprint.returnType != null && !method.returnType.startsWith(methodFingerprint.returnType))
+                return false
+
+            if (methodFingerprint.accessFlags != null && methodFingerprint.accessFlags != method.accessFlags)
+                return false
+
+
+            fun parametersEqual(
+                parameters1: Iterable<CharSequence>, parameters2: Iterable<CharSequence>
+            ): Boolean {
+                if (parameters1.count() != parameters2.count()) return false
+                val iterator1 = parameters1.iterator()
+                parameters2.forEach {
+                    if (!it.startsWith(iterator1.next())) return false
+                }
+                return true
+            }
+
+            if (methodFingerprint.parameters != null && !parametersEqual(
+                    methodFingerprint.parameters, // TODO: parseParameters()
+                    method.parameterTypes
+                )
+            ) return false
+
+            @Suppress("UNNECESSARY_NOT_NULL_ASSERTION")
+            if (methodFingerprint.customFingerprint != null && !methodFingerprint.customFingerprint!!(method, forClass))
+                return false
+
+            val stringsScanResult: StringsScanResult? =
+                if (methodFingerprint.strings != null) {
+                    StringsScanResult(
+                        buildList {
+                            val implementation = method.implementation ?: return false
+
+                            val stringsList = methodFingerprint.strings.toMutableList()
+
+                            implementation.instructions.forEachIndexed { instructionIndex, instruction ->
+                                if (
+                                    instruction.opcode != Opcode.CONST_STRING &&
+                                    instruction.opcode != Opcode.CONST_STRING_JUMBO
+                                ) return@forEachIndexed
+
+                                val string = ((instruction as ReferenceInstruction).reference as StringReference).string
+                                val index = stringsList.indexOfFirst(string::contains)
+                                if (index == -1) return@forEachIndexed
+
+                                add(
+                                    StringMatch(
+                                        string,
+                                        instructionIndex
+                                    )
+                                )
+                                stringsList.removeAt(index)
+                            }
+
+                            if (stringsList.isNotEmpty()) return false
+                        }
+                    )
+                } else null
+
+            val patternScanResult = if (methodFingerprint.opcodes != null) {
+                method.implementation?.instructions ?: return false
+
+                fun Method.patternScan(
+                    fingerprint: MethodFingerprint
+                ): MethodFingerprintResult.MethodFingerprintScanResult.PatternScanResult? {
+                    val instructions = this.implementation!!.instructions
+                    val fingerprintFuzzyPatternScanThreshold = fingerprint.fuzzyPatternScanMethod?.threshold ?: 0
+
+                    val pattern = fingerprint.opcodes!!
+                    val instructionLength = instructions.count()
+                    val patternLength = pattern.count()
+
+                    for (index in 0 until instructionLength) {
+                        var patternIndex = 0
+                        var threshold = fingerprintFuzzyPatternScanThreshold
+
+                        while (index + patternIndex < instructionLength) {
+                            val originalOpcode = instructions.elementAt(index + patternIndex).opcode
+                            val patternOpcode = pattern.elementAt(patternIndex)
+
+                            if (patternOpcode != null && patternOpcode.ordinal != originalOpcode.ordinal) {
+                                // Reaching maximum threshold (0) means,
+                                // the pattern does not match to the current instructions.
+                                if (threshold-- == 0) break
+                            }
+
+                            if (patternIndex < patternLength - 1) {
+                                // If the entire pattern has not been scanned yet
+                                // continue the scan.
+                                patternIndex++
+                                continue
+                            }
+                            // The pattern is valid, generate warnings if fuzzyPatternScanMethod is FuzzyPatternScanMethod
+                            val result =
+                                MethodFingerprintResult.MethodFingerprintScanResult.PatternScanResult(
+                                    index,
+                                    index + patternIndex
+                                )
+                            if (fingerprint.fuzzyPatternScanMethod !is FuzzyPatternScanMethod) return result
+                            result.warnings = result.createWarnings(pattern, instructions)
+
+                            return result
+                        }
+                    }
+
+                    return null
+                }
+
+                method.patternScan(methodFingerprint) ?: return false
+            } else null
+
+            methodFingerprint.result = MethodFingerprintResult(
+                method,
+                forClass,
+                MethodFingerprintResult.MethodFingerprintScanResult(
+                    patternScanResult,
+                    stringsScanResult
+                ),
+                context
+            )
+
+            return true
+        }
+
+        private fun MethodFingerprintResult.MethodFingerprintScanResult.PatternScanResult.createWarnings(
+            pattern: Iterable<Opcode?>, instructions: Iterable<Instruction>
+        ) = buildList {
+            for ((patternIndex, instructionIndex) in (this@createWarnings.startIndex until this@createWarnings.endIndex).withIndex()) {
+                val originalOpcode = instructions.elementAt(instructionIndex).opcode
+                val patternOpcode = pattern.elementAt(patternIndex)
+
+                if (patternOpcode == null || patternOpcode.ordinal == originalOpcode.ordinal) continue
+
+                this.add(
+                    MethodFingerprintResult.MethodFingerprintScanResult.PatternScanResult.Warning(
+                        originalOpcode,
+                        patternOpcode,
+                        instructionIndex,
+                        patternIndex
+                    )
+                )
+            }
+        }
+    }
+}
+
+/**
+ * Represents the result of a [MethodFingerprintResult].
+ *
+ * @param method The matching method.
+ * @param classDef The [ClassDef] that contains the matching [method].
+ * @param scanResult The result of scanning for the [MethodFingerprint].
+ * @param context The [BytecodeContext] this [MethodFingerprintResult] is attached to, to create proxies.
+ */
+data class MethodFingerprintResult(
+    val method: Method,
+    val classDef: ClassDef,
+    val scanResult: MethodFingerprintScanResult,
+    internal val context: BytecodeContext
+) {
+    /**
+     * Returns a mutable clone of [classDef]
+     *
+     * Please note, this method allocates a [ClassProxy].
+     * Use [classDef] where possible.
+     */
+    @Suppress("MemberVisibilityCanBePrivate")
+    val mutableClass by lazy { context.classes.proxy(classDef).mutableClass }
+
+    /**
+     * Returns a mutable clone of [method]
+     *
+     * Please note, this method allocates a [ClassProxy].
+     * Use [method] where possible.
+     */
+    val mutableMethod by lazy {
+        mutableClass.methods.first {
+            MethodUtil.methodSignaturesMatch(it, this.method)
+        }
+    }
+
+    /**
+     * The result of scanning on the [MethodFingerprint].
+     * @param patternScanResult The result of the pattern scan.
+     * @param stringsScanResult The result of the string scan.
+     */
+    data class MethodFingerprintScanResult(
+        val patternScanResult: PatternScanResult?,
+        val stringsScanResult: StringsScanResult?
+    ) {
+        /**
+         * The result of scanning strings on the [MethodFingerprint].
+         * @param matches The list of strings that were matched.
+         */
+        data class StringsScanResult(val matches: List<StringMatch>) {
+            /**
+             * Represents a match for a string at an index.
+             * @param string The string that was matched.
+             * @param index The index of the string.
+             */
+            data class StringMatch(val string: String, val index: Int)
+        }
+
+        /**
+         * The result of a pattern scan.
+         * @param startIndex The start index of the instructions where to which this pattern matches.
+         * @param endIndex The end index of the instructions where to which this pattern matches.
+         * @param warnings A list of warnings considering this [PatternScanResult].
+         */
+        data class PatternScanResult(
+            val startIndex: Int,
+            val endIndex: Int,
+            var warnings: List<Warning>? = null
+        ) {
+            /**
+             * Represents warnings of the pattern scan.
+             * @param correctOpcode The opcode the instruction list has.
+             * @param wrongOpcode The opcode the pattern list of the signature currently has.
+             * @param instructionIndex The index of the opcode relative to the instruction list.
+             * @param patternIndex The index of the opcode relative to the pattern list from the signature.
+             */
+            data class Warning(
+                val correctOpcode: Opcode,
+                val wrongOpcode: Opcode,
+                val instructionIndex: Int,
+                val patternIndex: Int,
+            )
+        }
+    }
+}

revanced-patcher/src/main/kotlin/app/revanced/patcher/logging/Logger.kt

@@ -0,0 +1,20 @@
+package app.revanced.patcher.logging
+
+interface Logger {
+    fun error(msg: String) {}
+    fun warn(msg: String) {}
+    fun info(msg: String) {}
+    fun trace(msg: String) {}
+
+    object Nop : Logger
+}
+
+/**
+ * Turn a Patcher [Logger] into an [app.revanced.arsc.logging.Logger].
+ */
+internal fun Logger.asArscLogger() = object : app.revanced.arsc.logging.Logger {
+    override fun error(msg: String) = this@asArscLogger.error(msg)
+    override fun warn(msg: String) = this@asArscLogger.warn(msg)
+    override fun info(msg: String) = this@asArscLogger.info(msg)
+    override fun trace(msg: String) = this@asArscLogger.error(msg)
+}

revanced-patcher/src/main/kotlin/app/revanced/patcher/patch/Patch.kt

@@ -1,8 +1,8 @@
 package app.revanced.patcher.patch
 
-import app.revanced.patcher.data.BytecodeContext
-import app.revanced.patcher.data.Context
-import app.revanced.patcher.data.ResourceContext
+import app.revanced.patcher.BytecodeContext
+import app.revanced.patcher.Context
+import app.revanced.patcher.ResourceContext
 import app.revanced.patcher.fingerprint.method.impl.MethodFingerprint
 import java.io.Closeable
 
@@ -17,9 +17,8 @@ sealed interface Patch<out T : Context> {
      * The main function of the [Patch] which the patcher will call.
      *
      * @param context The [Context] the patch will work on.
-     * @return The result of executing the patch.
      */
-    fun execute(context: @UnsafeVariance T): PatchResult
+    suspend fun execute(context: @UnsafeVariance T)
 }
 
 /**
@@ -34,4 +33,10 @@ interface ResourcePatch : Patch<ResourceContext>
  */
 abstract class BytecodePatch(
     internal val fingerprints: Iterable<MethodFingerprint>? = null
-) : Patch<BytecodeContext>
+) : Patch<BytecodeContext>
+
+// TODO: populate this everywhere where the alias is not used yet
+/**
+ * The class type of [Patch].
+ */
+typealias PatchClass = Class<out Patch<Context>>

revanced-patcher/src/main/kotlin/app/revanced/patcher/patch/PatchException.kt

@@ -0,0 +1,12 @@
+package app.revanced.patcher.patch
+
+/**
+ * An exception thrown when patching.
+ *
+ * @param errorMessage The exception message.
+ * @param cause The corresponding [Throwable].
+ */
+class PatchException(errorMessage: String?, cause: Throwable?) : Exception(errorMessage, cause) {
+    constructor(errorMessage: String) : this(errorMessage, null)
+    constructor(cause: Throwable) : this(cause.message, cause)
+}

revanced-patcher/src/main/kotlin/app/revanced/patcher/patch/PatchOption.kt

@@ -2,8 +2,6 @@
 
 package app.revanced.patcher.patch
 
-import java.nio.file.Path
-import kotlin.io.path.pathString
 import kotlin.reflect.KProperty
 
 class NoSuchOptionException(val option: String) : Exception("No such option: $option")
@@ -229,20 +227,4 @@ sealed class PatchOption<T>(
     ) : ListOption<Int>(
         key, default, options, title, description, required, validator
     )
-
-    /**
-     * A [PatchOption] representing a [Path], backed by a [String].
-     * The validator passes a [String], if you need a [Path] you will have to convert it yourself.
-     * @see PatchOption
-     */
-    class PathOption(
-        key: String,
-        default: Path?,
-        title: String,
-        description: String,
-        required: Boolean = false,
-        validator: (String?) -> Boolean = { true }
-    ) : PatchOption<String>(
-        key, default?.pathString, title, description, required, validator
-    )
 }

revanced-patcher/src/main/kotlin/app/revanced/patcher/patch/annotations/PatchAnnotation.kt

@@ -1,6 +1,6 @@
 package app.revanced.patcher.patch.annotations
 
-import app.revanced.patcher.data.Context
+import app.revanced.patcher.Context
 import app.revanced.patcher.patch.Patch
 import kotlin.reflect.KClass
 
@@ -16,7 +16,7 @@ annotation class Patch(val include: Boolean = true)
  */
 @Target(AnnotationTarget.CLASS)
 annotation class DependsOn(
-    val dependencies: Array<KClass<out Patch<Context>>> = []
+    val dependencies: Array<KClass<out Patch<Context>>> = [] // TODO: This should be a list of PatchClass instead
 )
 
 
@@ -24,4 +24,4 @@ annotation class DependsOn(
  * Annotation to mark [Patch]es which depend on integrations.
  */
 @Target(AnnotationTarget.CLASS)
-annotation class RequiresIntegrations // required because integrations are decoupled from patches
+annotation class RequiresIntegrations // TODO: Remove this annotation and replace it with a proper system

revanced-patcher/src/main/kotlin/app/revanced/patcher/util/ClassMerger.kt

@@ -1,6 +1,6 @@
 package app.revanced.patcher.util
 
-import app.revanced.patcher.PatcherContext
+import app.revanced.patcher.BytecodeContext
 import app.revanced.patcher.extensions.or
 import app.revanced.patcher.logging.Logger
 import app.revanced.patcher.util.ClassMerger.Utils.asMutableClass
@@ -32,7 +32,7 @@ internal object ClassMerger {
      * @param context The context to traverse the class hierarchy in.
      * @param logger A logger.
      */
-    fun ClassDef.merge(otherClass: ClassDef, context: PatcherContext, logger: Logger? = null) = this
+    fun ClassDef.merge(otherClass: ClassDef, context: BytecodeContext, logger: Logger? = null) = this
         //.fixFieldAccess(otherClass, logger)
         //.fixMethodAccess(otherClass, logger)
         .addMissingFields(otherClass, logger)
@@ -89,10 +89,10 @@ internal object ClassMerger {
      * @param context The context to traverse the class hierarchy in.
      * @param logger A logger.
      */
-    private fun ClassDef.publicize(reference: ClassDef, context: PatcherContext, logger: Logger? = null) =
+    private fun ClassDef.publicize(reference: ClassDef, context: BytecodeContext, logger: Logger? = null) =
         if (reference.accessFlags.isPublic() && !accessFlags.isPublic())
             this.asMutableClass().apply {
-                context.bytecodeContext.traverseClassHierarchy(this) {
+                context.traverseClassHierarchy(this) {
                     if (accessFlags.isPublic()) return@traverseClassHierarchy
 
                     logger?.trace("Publicizing ${this.type}")

revanced-patcher/src/main/kotlin/app/revanced/patcher/util/ProxyBackedClassList.kt

@@ -0,0 +1,89 @@
+package app.revanced.patcher.util
+
+import app.revanced.patcher.util.proxy.ClassProxy
+import org.jf.dexlib2.iface.ClassDef
+
+/**
+ * A class that represents a list of classes and proxies.
+ *
+ * @param classes The classes to be backed by proxies.
+ */
+class ProxyBackedClassList(classes: Set<ClassDef>) : Iterable<ClassDef> {
+    // A list for pending proxied classes to be added to the current ProxyBackedClassList instance.
+    private val proxiedClasses = mutableListOf<ClassProxy>()
+    private val mutableClasses = classes.toMutableList()
+
+    /**
+     * Replace the [mutableClasses]es with their proxies.
+     */
+    internal fun applyProxies() {
+        proxiedClasses.removeIf { proxy ->
+            // If the proxy is unused, keep it in the proxiedClasses list.
+            if (!proxy.resolved) return@removeIf false
+
+            with(mutableClasses) {
+                remove(proxy.immutableClass)
+                add(proxy.mutableClass)
+            }
+
+            return@removeIf true
+        }
+    }
+
+    /**
+     * Replace a [ClassDef] at a given [index].
+     *
+     * @param index The index of the class to be replaced.
+     * @param classDef The new class to replace the old one.
+     */
+    operator fun set(index: Int, classDef: ClassDef) {
+        mutableClasses[index] = classDef
+    }
+
+    /**
+     * Get a [ClassDef] at a given [index].
+     *
+     * @param index The index of the class.
+     */
+    operator fun get(index: Int) = mutableClasses[index]
+
+    /**
+     * Iterator for the classes in [ProxyBackedClassList].
+     *
+     * @return The iterator for the classes.
+     */
+    override fun iterator() = mutableClasses.iterator()
+
+    /**
+     * Proxy a [ClassDef].
+     *
+     * Note: This creates a [ClassProxy] of the [ClassDef], if not already present.
+     *
+     * @return A proxy for the given class.
+     */
+    fun proxy(classDef: ClassDef) = proxiedClasses
+        .find { it.immutableClass.type == classDef.type } ?: ClassProxy(classDef).also(proxiedClasses::add)
+
+    /**
+     * Add a [ClassDef].
+     */
+    fun add(classDef: ClassDef) = mutableClasses.add(classDef)
+
+    /**
+     * Find a class by a given class name.
+     *
+     * @param className The name of the class.
+     * @return A proxy for the first class that matches the class name.
+     */
+    fun findClassProxied(className: String) = findClassProxied { it.type.contains(className) }
+
+    /**
+     * Find a class by a given predicate.
+     *
+     * @param predicate A predicate to match the class.
+     * @return A proxy for the first class that matches the predicate.
+     */
+    fun findClassProxied(predicate: (ClassDef) -> Boolean) = this.find(predicate)?.let(::proxy)
+
+    val size get() = mutableClasses.size
+}

revanced-patcher/src/main/kotlin/app/revanced/patcher/util/TypeUtil.kt

@@ -0,0 +1,19 @@
+package app.revanced.patcher.util
+
+import app.revanced.patcher.BytecodeContext
+import app.revanced.patcher.util.proxy.mutableTypes.MutableClass
+
+object TypeUtil {
+    /**
+     * Traverse the class hierarchy starting from the given root class.
+     *
+     * @param targetClass The class to start traversing the class hierarchy from.
+     * @param callback The function that is called for every class in the hierarchy.
+     */
+    fun BytecodeContext.traverseClassHierarchy(targetClass: MutableClass, callback: MutableClass.() -> Unit) {
+        callback(targetClass)
+        this.classes.findClassProxied(targetClass.superclass ?: return)?.mutableClass?.let {
+            traverseClassHierarchy(it, callback)
+        }
+    }
+}

revanced-patcher/src/main/kotlin/app/revanced/patcher/util/VersionReader.kt

@@ -0,0 +1,19 @@
+package app.revanced.patcher.util
+
+import java.util.*
+
+@Deprecated("This class serves no purpose anymore")
+internal object VersionReader {
+    @JvmStatic
+    private val properties = Properties().apply {
+        load(
+            VersionReader::class.java.getResourceAsStream("/app/revanced/patcher/version.properties")
+                ?: throw IllegalStateException("Could not load version.properties")
+        )
+    }
+
+    @JvmStatic
+    fun read(): String {
+        return properties.getProperty("version") ?: throw IllegalStateException("Version not found")
+    }
+}

revanced-patcher/src/main/kotlin/app/revanced/patcher/util/method/MethodWalker.kt

@@ -1,6 +1,6 @@
 package app.revanced.patcher.util.method
 
-import app.revanced.patcher.data.BytecodeContext
+import app.revanced.patcher.BytecodeContext
 import app.revanced.patcher.util.proxy.mutableTypes.MutableMethod
 import org.jf.dexlib2.iface.Method
 import org.jf.dexlib2.iface.instruction.ReferenceInstruction
@@ -41,7 +41,7 @@ class MethodWalker internal constructor(
             val instruction = instructions.elementAt(offset)
 
             val newMethod = (instruction as ReferenceInstruction).reference as MethodReference
-            val proxy = bytecodeContext.findClass(newMethod.definingClass)!!
+            val proxy = bytecodeContext.classes.findClassProxied(newMethod.definingClass)!!
 
             val methods = if (walkMutable) proxy.mutableClass.methods else proxy.immutableClass.methods
             currentMethod = methods.first {

revanced-patcher/src/main/kotlin/app/revanced/patcher/util/patch/PatchBundle.kt

@@ -0,0 +1,59 @@
+@file:Suppress("unused")
+
+package app.revanced.patcher.util.patch
+
+import app.revanced.patcher.extensions.AnnotationExtensions.findAnnotationRecursively
+import app.revanced.patcher.patch.Patch
+import app.revanced.patcher.patch.PatchClass
+import dalvik.system.PathClassLoader
+import org.jf.dexlib2.DexFileFactory
+import java.io.File
+import java.net.URLClassLoader
+import java.util.jar.JarFile
+import kotlin.streams.toList
+
+/**
+ * A patch bundle.
+ *
+ * @param fromClasses The classes to get [Patch]es from.
+ */
+sealed class PatchBundle private constructor(fromClasses: Iterable<Class<*>>) : Iterable<PatchClass> {
+    private val patches = fromClasses.filter {
+        if (it.isAnnotation) return@filter false
+
+        it.findAnnotationRecursively(app.revanced.patcher.patch.annotations.Patch::class) != null
+    }.map {
+        @Suppress("UNCHECKED_CAST")
+        it as PatchClass
+    }
+
+    override fun iterator() = patches.iterator()
+
+    /**
+     * A patch bundle of type [Jar].
+     *
+     * @param patchBundlePath The path to a patch bundle.
+     */
+    class Jar(private val patchBundlePath: File) : PatchBundle(
+        with(URLClassLoader(arrayOf(patchBundlePath.toURI().toURL()), PatchBundle::class.java.classLoader)) {
+            JarFile(patchBundlePath).stream().filter { it.name.endsWith(".class") }.map {
+                loadClass(
+                    it.realName.replace('/', '.').replace(".class", "")
+                )
+            }.toList()
+        }
+    )
+
+    /**
+     * A patch bundle of type [Dex] format.
+     *
+     * @param patchBundlePath The path to a patch bundle of dex format.
+     */
+    class Dex(private val patchBundlePath: File) : PatchBundle(
+        with(PathClassLoader(patchBundlePath.absolutePath, null, PatchBundle::class.java.classLoader)) {
+            DexFileFactory.loadDexFile(patchBundlePath, null).classes.map { classDef ->
+                classDef.type.substring(1, classDef.length - 1).replace('/', '.')
+            }.map { loadClass(it) }
+        }
+    )
+}

revanced-patcher/src/main/kotlin/app/revanced/patcher/util/proxy/mutableTypes/MutableMethod.kt

@@ -13,7 +13,7 @@ class MutableMethod(method: Method) : Method, BaseMethodReference() {
     private var accessFlags = method.accessFlags
     private var returnType = method.returnType
 
-    // Create own mutable MethodImplementation (due to not being able to change members like register count)
+    // TODO: Create own mutable MethodImplementation (due to not being able to change members like register count).
     private val _implementation by lazy { method.implementation?.let { MutableMethodImplementation(it) } }
     private val _annotations by lazy { method.annotations.map { annotation -> annotation.toMutable() }.toMutableSet() }
     private val _parameters by lazy { method.parameters.map { parameter -> parameter.toMutable() }.toMutableList() }

revanced-patcher/src/main/kotlin/app/revanced/patcher/util/proxy/mutableTypes/MutableMethodParameter.kt

@@ -4,7 +4,7 @@ import app.revanced.patcher.util.proxy.mutableTypes.MutableAnnotation.Companion.
 import org.jf.dexlib2.base.BaseMethodParameter
 import org.jf.dexlib2.iface.MethodParameter
 
-// TODO: finish overriding all members if necessary
+// TODO: Finish overriding all members if necessary.
 class MutableMethodParameter(parameter: MethodParameter) : MethodParameter, BaseMethodParameter() {
     private var type = parameter.type
     private var name = parameter.name

revanced-patcher/src/test/kotlin/app/revanced/patcher/patch/PatchOptionsTest.kt

@@ -3,8 +3,6 @@ package app.revanced.patcher.patch
 import app.revanced.patcher.usage.bytecode.ExampleBytecodePatch
 import org.junit.jupiter.api.Test
 import org.junit.jupiter.api.assertThrows
-import kotlin.io.path.Path
-import kotlin.io.path.pathString
 import kotlin.test.assertNotEquals
 
 internal class PatchOptionsTest {
@@ -35,10 +33,6 @@ internal class PatchOptionsTest {
                         println(choice)
                     }
                 }
-
-                is PatchOption.PathOption -> {
-                    option.value = Path("test.txt").pathString
-                }
             }
         }
         val option = options.get<String>("key1")

revanced-patcher/src/test/kotlin/app/revanced/patcher/usage/bytecode/ExampleBytecodePatch.kt

@@ -1,13 +1,15 @@
 package app.revanced.patcher.usage.bytecode
 
+import app.revanced.patcher.BytecodeContext
 import app.revanced.patcher.annotation.Description
 import app.revanced.patcher.annotation.Name
 import app.revanced.patcher.annotation.Version
-import app.revanced.patcher.data.BytecodeContext
 import app.revanced.patcher.extensions.InstructionExtensions.addInstructionsWithLabels
-import app.revanced.patcher.extensions.or
 import app.revanced.patcher.extensions.InstructionExtensions.replaceInstruction
-import app.revanced.patcher.patch.*
+import app.revanced.patcher.extensions.or
+import app.revanced.patcher.patch.BytecodePatch
+import app.revanced.patcher.patch.OptionsContainer
+import app.revanced.patcher.patch.PatchOption
 import app.revanced.patcher.patch.annotations.DependsOn
 import app.revanced.patcher.patch.annotations.Patch
 import app.revanced.patcher.usage.resource.annotation.ExampleResourceCompatibility
@@ -29,7 +31,6 @@ import org.jf.dexlib2.immutable.reference.ImmutableFieldReference
 import org.jf.dexlib2.immutable.reference.ImmutableStringReference
 import org.jf.dexlib2.immutable.value.ImmutableFieldEncodedValue
 import org.jf.dexlib2.util.Preconditions
-import kotlin.io.path.Path
 
 @Patch
 @Name("example-bytecode-patch")
@@ -40,7 +41,7 @@ import kotlin.io.path.Path
 class ExampleBytecodePatch : BytecodePatch(listOf(ExampleFingerprint)) {
     // This function will be executed by the patcher.
     // You can treat it as a constructor
-    override fun execute(context: BytecodeContext): PatchResult {
+    override suspend fun execute(context: BytecodeContext) {
         // Get the resolved method by its fingerprint from the resolver cache
         val result = ExampleFingerprint.result!!
 
@@ -60,7 +61,7 @@ class ExampleBytecodePatch : BytecodePatch(listOf(ExampleFingerprint)) {
         implementation.replaceStringAt(startIndex, "Hello, ReVanced! Editing bytecode.")
 
         // Get the class in which the method matching our fingerprint is defined in.
-        val mainClass = context.findClass {
+        val mainClass = context.classes.findClassProxied {
             it.type == result.classDef.type
         }!!.mutableClass
 
@@ -127,12 +128,6 @@ class ExampleBytecodePatch : BytecodePatch(listOf(ExampleFingerprint)) {
                 invoke-virtual { v0, v1 }, Ljava/io/PrintStream;->println(Ljava/lang/String;)V
                 """
         )
-
-        // Finally, tell the patcher that this patch was a success.
-        // You can also return PatchResultError with a message.
-        // If an exception is thrown inside this function,
-        // a PatchResultError will be returned with the error message.
-        return PatchResultSuccess()
     }
 
     /**
@@ -193,10 +188,5 @@ class ExampleBytecodePatch : BytecodePatch(listOf(ExampleFingerprint)) {
                 "key5", null, "title", "description", true
             )
         )
-        private var key6 by option(
-            PatchOption.PathOption(
-                "key6", Path("test.txt"), "title", "description", true
-            )
-        )
     }
 }

revanced-patcher/src/test/kotlin/app/revanced/patcher/usage/resource/patch/ExampleResourcePatch.kt

@@ -1,11 +1,11 @@
 package app.revanced.patcher.usage.resource.patch
 
+import app.revanced.patcher.ResourceContext
 import app.revanced.patcher.annotation.Description
 import app.revanced.patcher.annotation.Name
 import app.revanced.patcher.annotation.Version
-import app.revanced.patcher.data.ResourceContext
-import app.revanced.patcher.patch.PatchResult
-import app.revanced.patcher.patch.PatchResultSuccess
+import app.revanced.patcher.apk.Apk
+import app.revanced.patcher.openXmlFile
 import app.revanced.patcher.patch.ResourcePatch
 import app.revanced.patcher.patch.annotations.Patch
 import app.revanced.patcher.usage.resource.annotation.ExampleResourceCompatibility
@@ -17,8 +17,8 @@ import org.w3c.dom.Element
 @ExampleResourceCompatibility
 @Version("0.0.1")
 class ExampleResourcePatch : ResourcePatch {
-    override fun execute(context: ResourceContext): PatchResult {
-        context.xmlEditor["AndroidManifest.xml"].use { editor ->
+    override suspend fun execute(context: ResourceContext) {
+        context.apkBundle.base.resources.openXmlFile(Apk.MANIFEST_FILE_NAME).use { editor ->
             val element = editor // regular DomFileEditor
                 .file
                 .getElementsByTagName("application")
@@ -29,7 +29,5 @@ class ExampleResourcePatch : ResourcePatch {
                     "exampleValue"
                 )
         }
-
-        return PatchResultSuccess()
     }
 }

settings.gradle.kts

@@ -1 +1,28 @@
-rootProject.name = "revanced-patcher"
+pluginManagement {
+    repositories {
+        mavenCentral()
+        maven {
+            url = uri("https://maven.pkg.github.com/revanced/multidexlib2")
+            credentials {
+                username = providers.gradleProperty("gpr.user").orNull ?: System.getenv("GITHUB_ACTOR")
+                password = providers.gradleProperty("gpr.key").orNull ?: System.getenv("GITHUB_TOKEN")
+            }
+        }
+    }
+}
+
+dependencyResolutionManagement {
+    repositoriesMode.set(RepositoriesMode.FAIL_ON_PROJECT_REPOS)
+    repositories {
+        mavenCentral()
+        maven {
+            url = uri("https://maven.pkg.github.com/revanced/multidexlib2")
+            credentials {
+                username = providers.gradleProperty("gpr.user").orNull ?: System.getenv("GITHUB_ACTOR")
+                password = providers.gradleProperty("gpr.key").orNull ?: System.getenv("GITHUB_TOKEN")
+            }
+        }
+    }
+}
+
+include("revanced-patcher", "arsclib-utils")

src/main/kotlin/app/revanced/patcher/Patcher.kt

@@ -1,415 +0,0 @@
-package app.revanced.patcher
-
-import app.revanced.patcher.data.Context
-import app.revanced.patcher.extensions.PatchExtensions.dependencies
-import app.revanced.patcher.extensions.PatchExtensions.patchName
-import app.revanced.patcher.extensions.PatchExtensions.requiresIntegrations
-import app.revanced.patcher.fingerprint.method.impl.MethodFingerprint.Companion.resolve
-import app.revanced.patcher.patch.*
-import app.revanced.patcher.util.VersionReader
-import brut.androlib.Androlib
-import brut.androlib.meta.UsesFramework
-import brut.androlib.options.BuildOptions
-import brut.androlib.res.AndrolibResources
-import brut.androlib.res.data.ResPackage
-import brut.androlib.res.decoder.AXmlResourceParser
-import brut.androlib.res.decoder.ResAttrDecoder
-import brut.androlib.res.decoder.XmlPullStreamDecoder
-import brut.androlib.res.xml.ResXmlPatcher
-import brut.directory.ExtFile
-import lanchon.multidexlib2.BasicDexFileNamer
-import lanchon.multidexlib2.DexIO
-import lanchon.multidexlib2.MultiDexIO
-import org.jf.dexlib2.Opcodes
-import org.jf.dexlib2.iface.DexFile
-import org.jf.dexlib2.writer.io.MemoryDataStore
-import java.io.Closeable
-import java.io.File
-import java.io.OutputStream
-import java.nio.file.Files
-
-internal val NAMER = BasicDexFileNamer()
-
-/**
- * The ReVanced Patcher.
- * @param options The options for the patcher.
- */
-class Patcher(private val options: PatcherOptions) {
-    private val logger = options.logger
-    private val opcodes: Opcodes
-    private var resourceDecodingMode = ResourceDecodingMode.MANIFEST_ONLY
-    private var mergeIntegrations = false
-    val context: PatcherContext
-
-    companion object {
-        @JvmStatic
-        val version = VersionReader.read()
-        private fun BuildOptions.setBuildOptions(options: PatcherOptions) {
-            this.aaptPath = options.aaptPath
-            this.useAapt2 = true
-            this.frameworkFolderLocation = options.frameworkFolderLocation
-        }
-    }
-
-    init {
-        logger.info("Reading dex files")
-        // read dex files
-        val dexFile = MultiDexIO.readDexFile(true, options.inputFile, NAMER, null, null)
-        // get the opcodes
-        opcodes = dexFile.opcodes
-        // finally create patcher context
-        context = PatcherContext(dexFile.classes.toMutableList(), File(options.resourceCacheDirectory))
-
-        // decode manifest file
-        decodeResources(ResourceDecodingMode.MANIFEST_ONLY)
-    }
-
-    /**
-     * Add integrations to be merged by the patcher.
-     * The integrations will only be merged, if necessary.
-     *
-     * @param integrations The integrations, must be dex files or dex file container such as ZIP, APK or DEX files.
-     * @param callback The callback for [integrations] which are being added.
-     */
-    fun addIntegrations(
-        integrations: List<File>,
-        callback: (File) -> Unit
-    ) {
-        context.integrations.apply integrations@{
-            add(integrations)
-            this@integrations.callback = callback
-        }
-    }
-
-    /**
-     * Save the patched dex file.
-     */
-    fun save(): PatcherResult {
-        val packageMetadata = context.packageMetadata
-        val metaInfo = packageMetadata.metaInfo
-        var resourceFile: File? = null
-
-        when (resourceDecodingMode) {
-            ResourceDecodingMode.FULL -> {
-                val cacheDirectory = ExtFile(options.resourceCacheDirectory)
-                try {
-                    val androlibResources = AndrolibResources().also { resources ->
-                        resources.buildOptions = BuildOptions().also { buildOptions ->
-                            buildOptions.setBuildOptions(options)
-                            buildOptions.isFramework = metaInfo.isFrameworkApk
-                            buildOptions.resourcesAreCompressed = metaInfo.compressionType
-                            buildOptions.doNotCompress = metaInfo.doNotCompress
-                        }
-
-                        resources.setSdkInfo(metaInfo.sdkInfo)
-                        resources.setVersionInfo(metaInfo.versionInfo)
-                        resources.setSharedLibrary(metaInfo.sharedLibrary)
-                        resources.setSparseResources(metaInfo.sparseResources)
-                    }
-
-                    val manifestFile = cacheDirectory.resolve("AndroidManifest.xml")
-
-                    ResXmlPatcher.fixingPublicAttrsInProviderAttributes(manifestFile)
-
-                    val aaptFile = cacheDirectory.resolve("aapt_temp_file")
-
-                    // delete if it exists
-                    Files.deleteIfExists(aaptFile.toPath())
-
-                    val resDirectory = cacheDirectory.resolve("res")
-                    val includedFiles = metaInfo.usesFramework.ids.map { id ->
-                        androlibResources.getFrameworkApk(
-                            id, metaInfo.usesFramework.tag
-                        )
-                    }.toTypedArray()
-
-                    logger.info("Compiling resources")
-                    androlibResources.aaptPackage(
-                        aaptFile, manifestFile, resDirectory, null, null, includedFiles
-                    )
-
-                    resourceFile = aaptFile
-                } finally {
-                    cacheDirectory.close()
-                }
-            }
-
-            else -> logger.info("Not compiling resources because resource patching is not required")
-        }
-
-        logger.trace("Creating new dex file")
-        val newDexFile = object : DexFile {
-            override fun getClasses() = context.bytecodeContext.classes.also { it.replaceClasses() }
-            override fun getOpcodes() = this@Patcher.opcodes
-        }
-
-        // write modified dex files
-        logger.info("Writing modified dex files")
-        val dexFiles = mutableMapOf<String, MemoryDataStore>()
-        MultiDexIO.writeDexFile(
-            true, -1, // core count
-            dexFiles, NAMER, newDexFile, DexIO.DEFAULT_MAX_DEX_POOL_SIZE, null
-        )
-
-        return PatcherResult(
-            dexFiles.map {
-                app.revanced.patcher.util.dex.DexFile(it.key, it.value.readAt(0))
-            },
-            metaInfo.doNotCompress?.toList(),
-            resourceFile
-        )
-    }
-
-    /**
-     * Add [Patch]es to the patcher.
-     * @param patches [Patch]es The patches to add.
-     */
-    fun addPatches(patches: Iterable<Class<out Patch<Context>>>) {
-        /**
-         * Returns true if at least one patches or its dependencies matches the given predicate.
-         */
-        fun Class<out Patch<Context>>.anyRecursively(predicate: (Class<out Patch<Context>>) -> Boolean): Boolean =
-            predicate(this) || dependencies?.any { it.java.anyRecursively(predicate) } == true
-
-
-        // Determine if resource patching is required.
-        for (patch in patches) {
-            if (patch.anyRecursively { ResourcePatch::class.java.isAssignableFrom(it) }) {
-                resourceDecodingMode = ResourceDecodingMode.FULL
-                break
-            }
-        }
-
-        // Determine if merging integrations is required.
-        for (patch in patches) {
-            if (patch.anyRecursively { it.requiresIntegrations }) {
-                mergeIntegrations = true
-                break
-            }
-        }
-
-        context.patches.addAll(patches)
-    }
-
-    /**
-     * Decode resources for the patcher.
-     *
-     * @param mode The [ResourceDecodingMode] to use when decoding.
-     */
-    private fun decodeResources(mode: ResourceDecodingMode) {
-        val extInputFile = ExtFile(options.inputFile)
-        try {
-            val androlib = Androlib(BuildOptions().also { it.setBuildOptions(options) })
-            val resourceTable = androlib.getResTable(extInputFile, true)
-            when (mode) {
-                ResourceDecodingMode.FULL -> {
-                    val outDir = File(options.resourceCacheDirectory)
-                    if (outDir.exists()) {
-                        logger.info("Deleting existing resource cache directory")
-                        if (!outDir.deleteRecursively()) {
-                            logger.error("Failed to delete existing resource cache directory")
-                        }
-                    }
-                    outDir.mkdirs()
-
-                    logger.info("Decoding resources")
-
-                    // decode resources to cache directory
-                    androlib.decodeManifestWithResources(extInputFile, outDir, resourceTable)
-                    androlib.decodeResourcesFull(extInputFile, outDir, resourceTable)
-
-                    // read additional metadata from the resource table
-                    context.packageMetadata.let { metadata ->
-                        metadata.metaInfo.usesFramework = UsesFramework().also { framework ->
-                            framework.ids = resourceTable.listFramePackages().map { it.id }.sorted()
-                        }
-
-                        // read files to not compress
-                        metadata.metaInfo.doNotCompress = buildList {
-                            androlib.recordUncompressedFiles(extInputFile, this)
-                        }
-                    }
-
-                }
-
-                ResourceDecodingMode.MANIFEST_ONLY -> {
-                    logger.info("Decoding AndroidManifest.xml only, because resources are not needed")
-
-                    // create decoder for the resource table
-                    val decoder = ResAttrDecoder()
-                    decoder.currentPackage = ResPackage(resourceTable, 0, null)
-
-                    // create xml parser with the decoder
-                    val axmlParser = AXmlResourceParser()
-                    axmlParser.attrDecoder = decoder
-
-                    // parse package information with the decoder and parser which will set required values in the resource table
-                    // instead of decodeManifest another more low level solution can be created to make it faster/better
-                    XmlPullStreamDecoder(
-                        axmlParser, AndrolibResources().resXmlSerializer
-                    ).decodeManifest(
-                        extInputFile.directory.getFileInput("AndroidManifest.xml"),
-                        object : OutputStream() {
-                            override fun write(b: Int) {
-                                // do nothing
-                            }
-                        }
-                    )
-                }
-            }
-
-            // read of the resourceTable which is created by reading the manifest file
-            context.packageMetadata.let { metadata ->
-                metadata.packageName = resourceTable.currentResPackage.name
-                metadata.packageVersion = resourceTable.versionInfo.versionName
-                metadata.metaInfo.versionInfo = resourceTable.versionInfo
-                metadata.metaInfo.sdkInfo = resourceTable.sdkInfo
-            }
-        } finally {
-            extInputFile.close()
-        }
-    }
-
-    /**
-     * Execute patches added the patcher.
-     *
-     * @param stopOnError If true, the patches will stop on the first error.
-     * @return A pair of the name of the [Patch] and its [PatchResult].
-     */
-    fun executePatches(stopOnError: Boolean = false): Sequence<Pair<String, Result<PatchResultSuccess>>> {
-        /**
-         * Execute a [Patch] and its dependencies recursively.
-         *
-         * @param patchClass The [Patch] to execute.
-         * @param executedPatches A map of [Patch]es paired to a boolean indicating their success, to prevent infinite recursion.
-         * @return The result of executing the [Patch].
-         */
-        fun executePatch(
-            patchClass: Class<out Patch<Context>>,
-            executedPatches: LinkedHashMap<String, ExecutedPatch>
-        ): PatchResult {
-            val patchName = patchClass.patchName
-
-            // if the patch has already applied silently skip it
-            if (executedPatches.contains(patchName)) {
-                if (!executedPatches[patchName]!!.success)
-                    return PatchResultError("'$patchName' did not succeed previously")
-
-                logger.trace("Skipping '$patchName' because it has already been applied")
-
-                return PatchResultSuccess()
-            }
-
-            // recursively execute all dependency patches
-            patchClass.dependencies?.forEach { dependencyClass ->
-                val dependency = dependencyClass.java
-
-                val result = executePatch(dependency, executedPatches)
-                if (result.isSuccess()) return@forEach
-
-                return PatchResultError(
-                    "'$patchName' depends on '${dependency.patchName}' but the following error was raised: " +
-                            result.error()!!.let { it.cause?.stackTraceToString() ?: it.message }
-                )
-            }
-
-            val isResourcePatch = ResourcePatch::class.java.isAssignableFrom(patchClass)
-            val patchInstance = patchClass.getDeclaredConstructor().newInstance()
-
-            // TODO: implement this in a more polymorphic way
-            val patchContext = if (isResourcePatch) {
-                context.resourceContext
-            } else {
-                context.bytecodeContext.also { context ->
-                    (patchInstance as BytecodePatch).fingerprints?.resolve(
-                        context,
-                        context.classes.classes
-                    )
-                }
-            }
-
-            logger.trace("Executing '$patchName' of type: ${if (isResourcePatch) "resource" else "bytecode"}")
-
-            return try {
-                patchInstance.execute(patchContext).also {
-                    executedPatches[patchName] = ExecutedPatch(patchInstance, it.isSuccess())
-                }
-            } catch (e: Exception) {
-                PatchResultError(e).also {
-                    executedPatches[patchName] = ExecutedPatch(patchInstance, false)
-                }
-            }
-        }
-
-        return sequence {
-            if (mergeIntegrations) context.integrations.merge(logger)
-
-            // prevent from decoding the manifest twice if it is not needed
-            if (resourceDecodingMode == ResourceDecodingMode.FULL) decodeResources(ResourceDecodingMode.FULL)
-
-            logger.trace("Executing all patches")
-
-            val executedPatches = LinkedHashMap<String, ExecutedPatch>() // first is name
-
-
-            context.patches.forEach { patch ->
-                val patchResult = executePatch(patch, executedPatches)
-
-                val result = if (patchResult.isSuccess()) {
-                    Result.success(patchResult.success()!!)
-                } else {
-                    Result.failure(patchResult.error()!!)
-                }
-
-                // TODO: This prints before the patch really finishes in case it is a Closeable
-                //  because the Closeable is closed after all patches are executed.
-                yield(patch.patchName to result)
-
-                if (stopOnError && patchResult.isError()) return@sequence
-            }
-
-            executedPatches.values
-                .filter(ExecutedPatch::success)
-                .map(ExecutedPatch::patchInstance)
-                .filterIsInstance(Closeable::class.java)
-                .asReversed().forEach {
-                    try {
-                        it.close()
-                    } catch (exception: Exception) {
-                        val patchName = (it as Patch<Context>).javaClass.patchName
-
-                        logger.error("Failed to close '$patchName': ${exception.stackTraceToString()}")
-
-                        yield(patchName to Result.failure(exception))
-
-                        // This is not failsafe. If a patch throws an exception while closing,
-                        // the other patches that depend on it may fail.
-                        if (stopOnError) return@sequence
-                    }
-                }
-        }
-    }
-
-    /**
-     * The type of decoding the resources.
-     */
-    private enum class ResourceDecodingMode {
-        /**
-         * Decode all resources.
-         */
-        FULL,
-
-        /**
-         * Decode the manifest file only.
-         */
-        MANIFEST_ONLY,
-    }
-}
-
-/**
- * A result of executing a [Patch].
- *
- * @param patchInstance The instance of the [Patch] that was applied.
- * @param success The result of the [Patch].
- */
-internal data class ExecutedPatch(val patchInstance: Patch<Context>, val success: Boolean)

src/main/kotlin/app/revanced/patcher/PatcherContext.kt

@@ -1,64 +0,0 @@
-package app.revanced.patcher
-
-import app.revanced.patcher.data.*
-import app.revanced.patcher.logging.Logger
-import app.revanced.patcher.patch.Patch
-import app.revanced.patcher.util.ClassMerger.merge
-import org.jf.dexlib2.iface.ClassDef
-import java.io.File
-
-data class PatcherContext(
-    val classes: MutableList<ClassDef>,
-    val resourceCacheDirectory: File,
-) {
-    val packageMetadata = PackageMetadata()
-    internal val patches = mutableListOf<Class<out Patch<Context>>>()
-    internal val integrations = Integrations(this)
-    internal val bytecodeContext = BytecodeContext(classes)
-    internal val resourceContext = ResourceContext(resourceCacheDirectory)
-
-    internal class Integrations(val context: PatcherContext) {
-        var callback: ((File) -> Unit)? = null
-        private val integrations: MutableList<File> = mutableListOf()
-
-        fun add(integrations: List<File>) = this@Integrations.integrations.addAll(integrations)
-
-        /**
-         * Merge integrations.
-         * @param logger A logger.
-         */
-        fun merge(logger: Logger) {
-            with(context.bytecodeContext.classes) {
-                for (integrations in integrations) {
-                    callback?.let { it(integrations) }
-
-                    for (classDef in lanchon.multidexlib2.MultiDexIO.readDexFile(
-                        true,
-                        integrations,
-                        NAMER,
-                        null,
-                        null
-                    ).classes) {
-                        val type = classDef.type
-
-                        val result = classes.findIndexed { it.type == type }
-                        if (result == null) {
-                            logger.trace("Merging type $type")
-                            classes.add(classDef)
-                            continue
-                        }
-
-                        val (existingClass, existingClassIndex) = result
-
-                        logger.trace("Type $type exists. Adding missing methods and fields.")
-
-                        existingClass.merge(classDef, context, logger).let { mergedClass ->
-                            if (mergedClass !== existingClass) // referential equality check
-                                classes[existingClassIndex] = mergedClass
-                        }
-                    }
-                }
-            }
-        }
-    }
-}

src/main/kotlin/app/revanced/patcher/PatcherOptions.kt

@@ -1,21 +0,0 @@
-package app.revanced.patcher
-
-import app.revanced.patcher.logging.Logger
-import app.revanced.patcher.logging.impl.NopLogger
-import java.io.File
-
-/**
- * Options for the [Patcher].
- * @param inputFile The input file (usually an apk file).
- * @param resourceCacheDirectory Directory to cache resources.
- * @param aaptPath Optional path to a custom aapt binary.
- * @param frameworkFolderLocation Optional path to a custom framework folder.
- * @param logger Custom logger implementation for the [Patcher].
- */
-data class PatcherOptions(
-    internal val inputFile: File,
-    internal val resourceCacheDirectory: String,
-    internal val aaptPath: String? = null,
-    internal val frameworkFolderLocation: String? = null,
-    internal val logger: Logger = NopLogger
-)

src/main/kotlin/app/revanced/patcher/PatcherResult.kt

@@ -1,16 +0,0 @@
-package app.revanced.patcher
-
-import app.revanced.patcher.util.dex.DexFile
-import java.io.File
-
-/**
- * The result of a patcher.
- * @param dexFiles The patched dex files.
- * @param doNotCompress List of relative paths to files to exclude from compressing.
- * @param resourceFile File containing resources that need to be extracted into the APK.
- */
-data class PatcherResult(
-    val dexFiles: List<DexFile>,
-    val doNotCompress: List<String>? = null,
-    val resourceFile: File?
-)

src/main/kotlin/app/revanced/patcher/data/Context.kt

@@ -1,170 +0,0 @@
-package app.revanced.patcher.data
-
-import app.revanced.patcher.util.ProxyBackedClassList
-import app.revanced.patcher.util.method.MethodWalker
-import org.jf.dexlib2.iface.ClassDef
-import org.jf.dexlib2.iface.Method
-import org.w3c.dom.Document
-import java.io.Closeable
-import java.io.File
-import java.io.InputStream
-import java.io.OutputStream
-import javax.xml.parsers.DocumentBuilderFactory
-import javax.xml.transform.TransformerFactory
-import javax.xml.transform.dom.DOMSource
-import javax.xml.transform.stream.StreamResult
-
-/**
- * A common interface to constrain [Context] to [BytecodeContext] and [ResourceContext].
- */
-
-sealed interface Context
-
-class BytecodeContext internal constructor(classes: MutableList<ClassDef>) : Context {
-    /**
-     * The list of classes.
-     */
-    val classes = ProxyBackedClassList(classes)
-
-    /**
-     * Find a class by a given class name.
-     *
-     * @param className The name of the class.
-     * @return A proxy for the first class that matches the class name.
-     */
-    fun findClass(className: String) = findClass { it.type.contains(className) }
-
-    /**
-     * Find a class by a given predicate.
-     *
-     * @param predicate A predicate to match the class.
-     * @return A proxy for the first class that matches the predicate.
-     */
-    fun findClass(predicate: (ClassDef) -> Boolean) =
-        // if we already proxied the class matching the predicate...
-        classes.proxies.firstOrNull { predicate(it.immutableClass) } ?:
-        // else resolve the class to a proxy and return it, if the predicate is matching a class
-        classes.find(predicate)?.let { proxy(it) }
-
-    fun proxy(classDef: ClassDef): app.revanced.patcher.util.proxy.ClassProxy {
-        var proxy = this.classes.proxies.find { it.immutableClass.type == classDef.type }
-        if (proxy == null) {
-            proxy = app.revanced.patcher.util.proxy.ClassProxy(classDef)
-            this.classes.add(proxy)
-        }
-        return proxy
-    }
-}
-
-/**
- * Create a [MethodWalker] instance for the current [BytecodeContext].
- *
- * @param startMethod The method to start at.
- * @return A [MethodWalker] instance.
- */
-fun BytecodeContext.toMethodWalker(startMethod: Method): MethodWalker {
-    return MethodWalker(this, startMethod)
-}
-
-internal inline fun <T> Iterable<T>.findIndexed(predicate: (T) -> Boolean): Pair<T, Int>? {
-    for ((index, element) in this.withIndex()) {
-        if (predicate(element)) {
-            return element to index
-        }
-    }
-    return null
-}
-
-class ResourceContext internal constructor(private val resourceCacheDirectory: File) : Context, Iterable<File> {
-    val xmlEditor = XmlFileHolder()
-
-    operator fun get(path: String) = resourceCacheDirectory.resolve(path)
-
-    override fun iterator() = resourceCacheDirectory.walkTopDown().iterator()
-
-    inner class XmlFileHolder {
-        operator fun get(inputStream: InputStream) =
-            DomFileEditor(inputStream)
-
-        operator fun get(path: String): DomFileEditor {
-            return DomFileEditor(this@ResourceContext[path])
-        }
-
-    }
-}
-
-/**
- * Wrapper for a file that can be edited as a dom document.
- *
- * This constructor does not check for locks to the file when writing.
- * Use the secondary constructor.
- *
- * @param inputStream the input stream to read the xml file from.
- * @param outputStream the output stream to write the xml file to. If null, the file will be read only.
- *
- */
-class DomFileEditor internal constructor(
-    private val inputStream: InputStream,
-    private val outputStream: Lazy<OutputStream>? = null,
-) : Closeable {
-    // path to the xml file to unlock the resource when closing the editor
-    private var filePath: String? = null
-    private var closed: Boolean = false
-
-    /**
-     * The document of the xml file
-     */
-    val file: Document = DocumentBuilderFactory.newInstance().newDocumentBuilder().parse(inputStream)
-        .also(Document::normalize)
-
-
-    // lazily open an output stream
-    // this is required because when constructing a DomFileEditor the output stream is created along with the input stream, which is not allowed
-    // the workaround is to lazily create the output stream. This way it would be used after the input stream is closed, which happens in the constructor
-    constructor(file: File) : this(file.inputStream(), lazy { file.outputStream() }) {
-        // increase the lock
-        locks.merge(file.path, 1, Integer::sum)
-        filePath = file.path
-    }
-
-    /**
-     * Closes the editor. Write backs and decreases the lock count.
-     *
-     * Will not write back to the file if the file is still locked.
-     */
-    override fun close() {
-        if (closed) return
-
-        inputStream.close()
-
-        // if the output stream is not null, do not close it
-        outputStream?.let {
-            // prevent writing to same file, if it is being locked
-            // isLocked will be false if the editor was created through a stream
-            val isLocked = filePath?.let { path ->
-                val isLocked = locks[path]!! > 1
-                // decrease the lock count if the editor was opened for a file
-                locks.merge(path, -1, Integer::sum)
-                isLocked
-            } ?: false
-
-            // if unlocked, write back to the file
-            if (!isLocked) {
-                it.value.use { stream ->
-                    val result = StreamResult(stream)
-                    TransformerFactory.newInstance().newTransformer().transform(DOMSource(file), result)
-                }
-
-                it.value.close()
-                return
-            }
-        }
-
-        closed = true
-    }
-
-    private companion object {
-        // map of concurrent open files
-        val locks = mutableMapOf<String, Int>()
-    }
-}

src/main/kotlin/app/revanced/patcher/data/PackageMetadata.kt

@@ -1,13 +0,0 @@
-package app.revanced.patcher.data
-
-import brut.androlib.meta.MetaInfo
-
-/**
- * Metadata about a package.
- */
-class PackageMetadata {
-    lateinit var packageName: String
-    lateinit var packageVersion: String
-
-    internal val metaInfo: MetaInfo = MetaInfo()
-}

src/main/kotlin/app/revanced/patcher/fingerprint/method/impl/MethodFingerprint.kt

@@ -1,314 +0,0 @@
-package app.revanced.patcher.fingerprint.method.impl
-
-import app.revanced.patcher.data.BytecodeContext
-import app.revanced.patcher.extensions.MethodFingerprintExtensions.fuzzyPatternScanMethod
-import app.revanced.patcher.fingerprint.Fingerprint
-import app.revanced.patcher.fingerprint.method.annotation.FuzzyPatternScanMethod
-import app.revanced.patcher.util.proxy.ClassProxy
-import org.jf.dexlib2.Opcode
-import org.jf.dexlib2.iface.ClassDef
-import org.jf.dexlib2.iface.Method
-import org.jf.dexlib2.iface.instruction.Instruction
-import org.jf.dexlib2.iface.instruction.ReferenceInstruction
-import org.jf.dexlib2.iface.reference.StringReference
-import org.jf.dexlib2.util.MethodUtil
-
-private typealias StringMatch = MethodFingerprintResult.MethodFingerprintScanResult.StringsScanResult.StringMatch
-private typealias StringsScanResult = MethodFingerprintResult.MethodFingerprintScanResult.StringsScanResult
-
-/**
- * Represents the [MethodFingerprint] for a method.
- * @param returnType The return type of the method.
- * @param accessFlags The access flags of the method.
- * @param parameters The parameters of the method.
- * @param opcodes The list of opcodes of the method.
- * @param strings A list of strings which a method contains.
- * @param customFingerprint A custom condition for this fingerprint.
- * A `null` opcode is equals to an unknown opcode.
- */
-abstract class MethodFingerprint(
-    internal val returnType: String? = null,
-    internal val accessFlags: Int? = null,
-    internal val parameters: Iterable<String>? = null,
-    internal val opcodes: Iterable<Opcode?>? = null,
-    internal val strings: Iterable<String>? = null,
-    internal val customFingerprint: ((methodDef: Method, classDef: ClassDef) -> Boolean)? = null
-) : Fingerprint {
-    /**
-     * The result of the [MethodFingerprint].
-     */
-    var result: MethodFingerprintResult? = null
-
-    companion object {
-        /**
-         * Resolve a list of [MethodFingerprint] against a list of [ClassDef].
-         *
-         * @param classes The classes on which to resolve the [MethodFingerprint] in.
-         * @param context The [BytecodeContext] to host proxies.
-         * @return True if the resolution was successful, false otherwise.
-         */
-        fun Iterable<MethodFingerprint>.resolve(context: BytecodeContext, classes: Iterable<ClassDef>) {
-            for (fingerprint in this) // For each fingerprint
-                classes@ for (classDef in classes) // search through all classes for the fingerprint
-                    if (fingerprint.resolve(context, classDef))
-                        break@classes // if the resolution succeeded, continue with the next fingerprint
-        }
-
-        /**
-         * Resolve a [MethodFingerprint] against a [ClassDef].
-         *
-         * @param forClass The class on which to resolve the [MethodFingerprint] in.
-         * @param context The [BytecodeContext] to host proxies.
-         * @return True if the resolution was successful, false otherwise.
-         */
-        fun MethodFingerprint.resolve(context: BytecodeContext, forClass: ClassDef): Boolean {
-            for (method in forClass.methods)
-                if (this.resolve(context, method, forClass))
-                    return true
-            return false
-        }
-
-        /**
-         * Resolve a [MethodFingerprint] against a [Method].
-         *
-         * @param method The class on which to resolve the [MethodFingerprint] in.
-         * @param forClass The class on which to resolve the [MethodFingerprint].
-         * @param context The [BytecodeContext] to host proxies.
-         * @return True if the resolution was successful or if the fingerprint is already resolved, false otherwise.
-         */
-        fun MethodFingerprint.resolve(context: BytecodeContext, method: Method, forClass: ClassDef): Boolean {
-            val methodFingerprint = this
-
-            if (methodFingerprint.result != null) return true
-
-            if (methodFingerprint.returnType != null && !method.returnType.startsWith(methodFingerprint.returnType))
-                return false
-
-            if (methodFingerprint.accessFlags != null && methodFingerprint.accessFlags != method.accessFlags)
-                return false
-
-
-            fun parametersEqual(
-                parameters1: Iterable<CharSequence>, parameters2: Iterable<CharSequence>
-            ): Boolean {
-                if (parameters1.count() != parameters2.count()) return false
-                val iterator1 = parameters1.iterator()
-                parameters2.forEach {
-                    if (!it.startsWith(iterator1.next())) return false
-                }
-                return true
-            }
-
-            if (methodFingerprint.parameters != null && !parametersEqual(
-                    methodFingerprint.parameters, // TODO: parseParameters()
-                    method.parameterTypes
-                )
-            ) return false
-
-            @Suppress("UNNECESSARY_NOT_NULL_ASSERTION")
-            if (methodFingerprint.customFingerprint != null && !methodFingerprint.customFingerprint!!(method, forClass))
-                return false
-
-            val stringsScanResult: StringsScanResult? =
-                if (methodFingerprint.strings != null) {
-                    StringsScanResult(
-                        buildList {
-                            val implementation = method.implementation ?: return false
-
-                            val stringsList = methodFingerprint.strings.toMutableList()
-
-                            implementation.instructions.forEachIndexed { instructionIndex, instruction ->
-                                if (
-                                    instruction.opcode != Opcode.CONST_STRING &&
-                                    instruction.opcode != Opcode.CONST_STRING_JUMBO
-                                ) return@forEachIndexed
-
-                                val string = ((instruction as ReferenceInstruction).reference as StringReference).string
-                                val index = stringsList.indexOfFirst(string::contains)
-                                if (index == -1) return@forEachIndexed
-
-                                add(
-                                    StringMatch(
-                                        string,
-                                        instructionIndex
-                                    )
-                                )
-                                stringsList.removeAt(index)
-                            }
-
-                            if (stringsList.isNotEmpty()) return false
-                        }
-                    )
-                } else null
-
-            val patternScanResult = if (methodFingerprint.opcodes != null) {
-                method.implementation?.instructions ?: return false
-
-                method.patternScan(methodFingerprint) ?: return false
-            } else null
-
-            methodFingerprint.result = MethodFingerprintResult(
-                method,
-                forClass,
-                MethodFingerprintResult.MethodFingerprintScanResult(
-                    patternScanResult,
-                    stringsScanResult
-                ),
-                context
-            )
-
-            return true
-        }
-
-        private fun Method.patternScan(
-            fingerprint: MethodFingerprint
-        ): MethodFingerprintResult.MethodFingerprintScanResult.PatternScanResult? {
-            val instructions = this.implementation!!.instructions
-            val fingerprintFuzzyPatternScanThreshold = fingerprint.fuzzyPatternScanMethod?.threshold ?: 0
-
-            val pattern = fingerprint.opcodes!!
-            val instructionLength = instructions.count()
-            val patternLength = pattern.count()
-
-            for (index in 0 until instructionLength) {
-                var patternIndex = 0
-                var threshold = fingerprintFuzzyPatternScanThreshold
-
-                while (index + patternIndex < instructionLength) {
-                    val originalOpcode = instructions.elementAt(index + patternIndex).opcode
-                    val patternOpcode = pattern.elementAt(patternIndex)
-
-                    if (patternOpcode != null && patternOpcode.ordinal != originalOpcode.ordinal) {
-                        // reaching maximum threshold (0) means,
-                        // the pattern does not match to the current instructions
-                        if (threshold-- == 0) break
-                    }
-
-                    if (patternIndex < patternLength - 1) {
-                        // if the entire pattern has not been scanned yet
-                        // continue the scan
-                        patternIndex++
-                        continue
-                    }
-                    // the pattern is valid, generate warnings if fuzzyPatternScanMethod is FuzzyPatternScanMethod
-                    val result =
-                        MethodFingerprintResult.MethodFingerprintScanResult.PatternScanResult(
-                            index,
-                            index + patternIndex
-                        )
-                    if (fingerprint.fuzzyPatternScanMethod !is FuzzyPatternScanMethod) return result
-                    result.warnings = result.createWarnings(pattern, instructions)
-
-                    return result
-                }
-            }
-
-            return null
-        }
-
-        private fun MethodFingerprintResult.MethodFingerprintScanResult.PatternScanResult.createWarnings(
-            pattern: Iterable<Opcode?>, instructions: Iterable<Instruction>
-        ) = buildList {
-            for ((patternIndex, instructionIndex) in (this@createWarnings.startIndex until this@createWarnings.endIndex).withIndex()) {
-                val originalOpcode = instructions.elementAt(instructionIndex).opcode
-                val patternOpcode = pattern.elementAt(patternIndex)
-
-                if (patternOpcode == null || patternOpcode.ordinal == originalOpcode.ordinal) continue
-
-                this.add(
-                    MethodFingerprintResult.MethodFingerprintScanResult.PatternScanResult.Warning(
-                        originalOpcode,
-                        patternOpcode,
-                        instructionIndex,
-                        patternIndex
-                    )
-                )
-            }
-        }
-    }
-}
-
-/**
- * Represents the result of a [MethodFingerprintResult].
- *
- * @param method The matching method.
- * @param classDef The [ClassDef] that contains the matching [method].
- * @param scanResult The result of scanning for the [MethodFingerprint].
- * @param context The [BytecodeContext] this [MethodFingerprintResult] is attached to, to create proxies.
- */
-data class MethodFingerprintResult(
-    val method: Method,
-    val classDef: ClassDef,
-    val scanResult: MethodFingerprintScanResult,
-    internal val context: BytecodeContext
-) {
-    /**
-     * Returns a mutable clone of [classDef]
-     *
-     * Please note, this method allocates a [ClassProxy].
-     * Use [classDef] where possible.
-     */
-    @Suppress("MemberVisibilityCanBePrivate")
-    val mutableClass by lazy { context.proxy(classDef).mutableClass }
-
-    /**
-     * Returns a mutable clone of [method]
-     *
-     * Please note, this method allocates a [ClassProxy].
-     * Use [method] where possible.
-     */
-    val mutableMethod by lazy {
-        mutableClass.methods.first {
-            MethodUtil.methodSignaturesMatch(it, this.method)
-        }
-    }
-
-    /**
-     * The result of scanning on the [MethodFingerprint].
-     * @param patternScanResult The result of the pattern scan.
-     * @param stringsScanResult The result of the string scan.
-     */
-    data class MethodFingerprintScanResult(
-        val patternScanResult: PatternScanResult?,
-        val stringsScanResult: StringsScanResult?
-    ) {
-        /**
-         * The result of scanning strings on the [MethodFingerprint].
-         * @param matches The list of strings that were matched.
-         */
-        data class StringsScanResult(val matches: List<StringMatch>) {
-            /**
-             * Represents a match for a string at an index.
-             * @param string The string that was matched.
-             * @param index The index of the string.
-             */
-            data class StringMatch(val string: String, val index: Int)
-        }
-
-        /**
-         * The result of a pattern scan.
-         * @param startIndex The start index of the instructions where to which this pattern matches.
-         * @param endIndex The end index of the instructions where to which this pattern matches.
-         * @param warnings A list of warnings considering this [PatternScanResult].
-         */
-        data class PatternScanResult(
-            val startIndex: Int,
-            val endIndex: Int,
-            var warnings: List<Warning>? = null
-        ) {
-            /**
-             * Represents warnings of the pattern scan.
-             * @param correctOpcode The opcode the instruction list has.
-             * @param wrongOpcode The opcode the pattern list of the signature currently has.
-             * @param instructionIndex The index of the opcode relative to the instruction list.
-             * @param patternIndex The index of the opcode relative to the pattern list from the signature.
-             */
-            data class Warning(
-                val correctOpcode: Opcode,
-                val wrongOpcode: Opcode,
-                val instructionIndex: Int,
-                val patternIndex: Int,
-            )
-        }
-    }
-}

src/main/kotlin/app/revanced/patcher/logging/Logger.kt

@@ -1,8 +0,0 @@
-package app.revanced.patcher.logging
-
-interface Logger {
-    fun error(msg: String) {}
-    fun warn(msg: String) {}
-    fun info(msg: String) {}
-    fun trace(msg: String) {}
-}

src/main/kotlin/app/revanced/patcher/logging/impl/NopLogger.kt

@@ -1,5 +0,0 @@
-package app.revanced.patcher.logging.impl
-
-import app.revanced.patcher.logging.Logger
-
-object NopLogger : Logger

src/main/kotlin/app/revanced/patcher/patch/PatchResult.kt

@@ -1,35 +0,0 @@
-package app.revanced.patcher.patch
-
-interface PatchResult {
-    fun error(): PatchResultError? {
-        if (this is PatchResultError) {
-            return this
-        }
-        return null
-    }
-
-    fun success(): PatchResultSuccess? {
-        if (this is PatchResultSuccess) {
-            return this
-        }
-        return null
-    }
-
-    fun isError(): Boolean {
-        return this is PatchResultError
-    }
-
-    fun isSuccess(): Boolean {
-        return this is PatchResultSuccess
-    }
-}
-
-class PatchResultError(
-    errorMessage: String?, cause: Exception?
-) : Exception(errorMessage, cause), PatchResult {
-    constructor(errorMessage: String) : this(errorMessage, null)
-    constructor(cause: Exception) : this(cause.message, cause)
-
-}
-
-class PatchResultSuccess : PatchResult

src/main/kotlin/app/revanced/patcher/util/ProxyBackedClassList.kt

@@ -1,46 +0,0 @@
-package app.revanced.patcher.util
-
-import app.revanced.patcher.util.proxy.ClassProxy
-import org.jf.dexlib2.iface.ClassDef
-
-/**
- * A class that represents a set of classes and proxies.
- *
- * @param classes The classes to be backed by proxies.
- */
-class ProxyBackedClassList(internal val classes: MutableList<ClassDef>) : Set<ClassDef> {
-    internal val proxies = mutableListOf<ClassProxy>()
-
-    /**
-     * Add a [ClassDef].
-     */
-    fun add(classDef: ClassDef) = classes.add(classDef)
-
-    /**
-     * Add a [ClassProxy].
-     */
-    fun add(classProxy: ClassProxy) = proxies.add(classProxy)
-
-    /**
-     * Replace all classes with their mutated versions.
-     */
-    internal fun replaceClasses() =
-        proxies.removeIf { proxy ->
-            // if the proxy is unused, keep it in the list
-            if (!proxy.resolved) return@removeIf false
-
-            // if it has been used, replace the original class with the new class
-            val index = classes.indexOfFirst { it.type == proxy.immutableClass.type }
-            classes[index] = proxy.mutableClass
-
-            // return true to remove it from the proxies list
-            return@removeIf true
-        }
-
-
-    override val size get() = classes.size
-    override fun contains(element: ClassDef) = classes.contains(element)
-    override fun containsAll(elements: Collection<ClassDef>) = classes.containsAll(elements)
-    override fun isEmpty() = classes.isEmpty()
-    override fun iterator() = classes.iterator()
-}

src/main/kotlin/app/revanced/patcher/util/TypeUtil.kt

@@ -1,19 +0,0 @@
-package app.revanced.patcher.util
-
-import app.revanced.patcher.data.BytecodeContext
-import app.revanced.patcher.util.proxy.mutableTypes.MutableClass
-
-object TypeUtil {
-    /**
-     * traverse the class hierarchy starting from the given root class
-     *
-     * @param targetClass the class to start traversing the class hierarchy from
-     * @param callback function that is called for every class in the hierarchy
-     */
-    fun BytecodeContext.traverseClassHierarchy(targetClass: MutableClass, callback: MutableClass.() -> Unit) {
-        callback(targetClass)
-        this.findClass(targetClass.superclass ?: return)?.mutableClass?.let {
-            traverseClassHierarchy(it, callback)
-        }
-    }
-}